BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933983
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33835.1 | Symbols: FES1 | Zinc finger C-x8-C-x5-C-x3-H type... 2809 0.0
> AT2G33835.1 | Symbols: FES1 | Zinc finger C-x8-C-x5-C-x3-H type
family protein | chr2:14311787-14314700 REVERSE LENGTH=2256
Length=2256
Score = 2809 bits (1521), Expect = 0.0
Identities = 1725/1821 (95%), Gaps = 23/1821 (1%)
Strand=Plus/Plus
Query 2 CCTCGCCGAAGACTTCAAGATGTCTGATTCCGACATGGACATTGATGATGATGAGGTCGA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCTCGCCGAAGACTTCAAGATGTCTGATTCCGACATGGACATTGATGATGATGAGGTCGA 175
Query 62 ACAAAAGGTGCAAGTACATACAATTGTAAGAGAATCTGAATTGCTTGATAAACCACCAAT 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 176 ACAAAAGGTGCAAGTACATACAATTGTAAGAGAATCTGAATTGTTTGATAAACCACCAAT 235
Query 122 TCAAGCTTCCAATTCCCACAACGATGTGAAGAGGCATTCTGTAACAACACCTTTAGATGA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCAAGCTTCCAATTCCCACAACGATGTGAAGAGGCATTCTGTAACAACACCTTTAGATGA 295
Query 182 GCAATCAAAAATCATAAAGGAACAAGCTTTTGCTCAATATAATGGTACTTTATCAAGATT 241
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 296 GCAATCAAAAATCATAAAGGAGCAAGCTTTTGCTCAAGATAATGGTACTTTACCAAGATT 355
Query 242 TCCTGCTCCGGGTATACCACCAAAAAGCTTTTTCCCTGGCGGTGAAGGGAATGAACCAGA 301
|||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||
Sbjct 356 TCCTGCTCCGGGTATACCGCCAAGAAGCTTTTTCACTGGCGGTGGTGGGAATGAACCAGA 415
Query 302 ACAAAAACGTGCAGCTCTTCCCTGCAAGTTTTTTGCTAAAGGGTGGTGTTTCAACGGGGT 361
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 416 ACAAAAACGTGCAGCTCTTCCCTGCAAATTTTTTGCTAAAGGGTGGTGTTTCAATGGGGT 475
Query 362 GTCCTGCAAGTTTCTACATGTGAAAGAGAATTCAAATTGCATTAGTCAACAACTGGCGGA 421
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 GTCCTGCAAGTTTCTACATGTGAAAGAGAATTCAAATTGCACTAGTCAACAACTGGCGGA 535
Query 422 AAATAGTATGGCTGGAAACGGTGGTATCCGGTCTGATCTAGAAAGAAGAATTTCGGACAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 AAATAGTATGGCTGGAAACGGTGGTATCCGGTCTGATCTAGAAAGAAGAATTTTGGACAG 595
Query 482 CAAAGAAGGTGTAAGATTTTCCCAGTTAAGCGAAAACGGCATGACATCTTTGCATACCAG 541
|| ||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 596 CAGAGAAGGTGTAAGAGTTTCCCAGTTAAGCGAAAACGGTGTGACATCGTTGCCTACCAG 655
Query 542 AAATGATATATCTTTCGTGAATCCCCCAGGTTCTCAGAGAGTTTTCTCCTCCATGTCTTT 601
| | |||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 656 AGAGGATATATCTTTCATGAAT----C-----CTCAGAGAGTTTTCTCCTCCATGTCTTT 706
Query 602 TGTGAATCCCCCAGGTTCTCAGAGAGTTTTCCCGTTCAGTAACGAGATGCGCTTTATGCC 661
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 707 TGTGAATCCCCCAGGTTCTCAGAGAGTTTTCCCGTTCAATAACGAGATGCGCTTTATGCC 766
Query 662 TTCATTTGAGAACA-TAGGAAGAGAAAGTTTGAAGCAAACATAT-G-G-TGATGTCACTG 717
||||||||| |||| || ||||||| |||||||||||||| ||| | | |||| ||||||
Sbjct 767 TTCATTTGAAAACATTA-GAAGAGAGAGTTTGAAGCAAACGTATGGTGCTGATTTCACTG 825
Query 718 ACAATAGGTCTCTAGTTATTAATAACAG-CAATTCCTTCACATTGAGAAGCAGCTTTGTT 776
|||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 826 ACAACAGGTCTCTAGTTATTAATAAC-GCCAATTCCTTCGCATTGAGAAGCAGCTTTGTT 884
Query 777 CATGAGCATAGACCTTCTATCAGTTCCTATCTAAAAACAGACATGGGATCTTCTGGACCA 836
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 885 CATGAGCATAGACCTTCTATCAGTTCCTATTTAAAAACAGACATGGGATCTGCTGGACCA 944
Query 837 GCCTGGACAGGATCATTATCCAGTTCTGTTCCTATGAAGGAGCGTGCTTCTACTGTGGGG 896
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 945 GCCTGGACAGGATCATTATCCAGTTCTGTTCCTATGAATGATCGTGCTTCTACGGTGGGG 1004
Query 897 CATTTTGAAAATGGGAATAATATATCTGGATCAGGATCACTTCCAACGCTGCAAGGGATA 956
|||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||
Sbjct 1005 GATTTTGAAAATGGGAATAGTTTATCTGGATCCGGATCACTTCCAACGCTGCAAGGGGTA 1064
Query 957 GCTGTTTCTTCTGATAAAGGCGCAGAAGGCAACACTACTAGCAATAAAAAGAAAGTTTCT 1016
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1065 GCTGTTTCTTCTGATAAAGGCGCAGAAGCCAACACTACTAGCACTAAAAAGAAAGTTTCT 1124
Query 1017 TCAGATGACTGGGAACCTTCTGAACCTTTTAAAGCATCTTTTACAATTCCACCTTATATA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCAGATGACTGGGAACCTTCTGAACCTTTTAAAGCATCTTTTACAATTCCACCTTATATT 1184
Query 1077 CTTCCCTCGTCTGATGCCCTCTACGATCCTTTCACGGATATAGAGAATCTAGGAGGAGAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1185 CTTCCCTCGTCTGATGCCCTCTACGATCCTTTCACGGATATAGAGAATCTAGGAG-A--C 1241
Query 1137 AGAGCTCTTAATGCTTCATTGTCAAGTAAAGGAGAACATGCACGGAAAAATTCCCGCCAG 1196
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1242 AGACCTCTTAATGATTCATTGTCAAGTAAAGGAGAACATGCACGGAAAAGTTCCTGCCAG 1301
Query 1197 CAAAAAGATGGTGATTCTGCTAGTGGTCCCGAAGCACGGGAAATT--AAGAATGATGATA 1254
|| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 1302 CAGAAAGATGGTGATTCTGCTAGTGGTCCCCAAGCACGGGA--TTGCAAGAATGATGATA 1359
Query 1255 AAAGCAGTTCATGCAGTCAAAACCAACACCAAGAAACTGTGACAAGGAGTTTGGAAGCAC 1314
|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 1360 AAAGCAGTTCATGCAGTCAAAATCAACACCAAGAAACCGTGGCAAGGAGTTTGGAAGCAC 1419
Query 1315 ATGGAGTAGTGGAAGGGGTGGCTACTTCAGTGGTTGATCAAAATGATGCAACAACACCTA 1374
||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 1420 ATGGAGTAGTGGAAGGGGTGGCTACGTCAGTGGTTGATCAAAATGATACAGCAACGCCTA 1479
Query 1375 GCAAAGAGATTTCTTCGGCTGCGGCTGCAGAGAACAGAGTTGTTTTGAAAAGAAGCAAAC 1434
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 1480 GCAAAGAGATTTCTTCGGCTACGGCTGCAGAGAATAGAGTTGTTTTGAAAAGAATCAAAC 1539
Query 1435 CTGCAGGGCATGATTCTTGGCATAGAAGTGATGGGTCTTCATATAAAAAGACAATGAAAT 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1540 CTGCAGGGCATGATTCTTGGCATAGAAGTGATGGGTCTTCATATAAAAAGACAAAGAAAT 1599
Query 1495 CAGATGAGATAGATGGTGAAGTGAGGTCAGATGCAGGGATGAAAGTAATGAGACAATTCC 1554
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1600 CAGATGAGATAGATGGTGAAGTGAGGTCAGATGCAGGAATGAAAGTAATGAGACTATTCC 1659
Query 1555 GGACTGCAGTTGTGGAAACCGTTAAAGAAATGTTGAAACCGTTGTGGCGTGAGGGCCGTC 1614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1660 GGACTGCAGTTGTGGAAACCATTAAAGAAATGTTGAAACCGTTGTGGCGTGAGGGTCGTC 1719
Query 1615 TTACCAAAGACGTGCATAACATGATAGTTAAAAAAGCTGCAGAAAAGGTAGTCAGTGCCG 1674
| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1720 TAACTAAAGACGTGCATAACATGATAGTTAAAAAAGCTGCAGAAAAGGTAGTCGGCGCCG 1779
Query 1675 CTGTCCAGTTCCATCAGGTACCAACTGACACCGAATCAGTTGATCAATATCTTGGTTTGT 1734
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1780 CTGTCCAGTTTCATCAGGTGCCAACTGACACAGAATCAGTTGATCAATATCTTGGTTTGT 1839
Query 1735 CTGCAACCAGAATTGTGAAGCTTGTTGAGGGGTATGTCGAAAAGTATGGTAAACCCTGAG 1794
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1840 CTGGAACCAGAATTGTGAAACTTGTCGAGGGGTATGTCGAAAAGTATGGTAAACCCTGAG 1899
Query 1795 TTATCAAACCAAATGTCACTT 1815
|||||||||||||||||||||
Sbjct 1900 TTATCAAACCAAATGTCACTT 1920
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 552 TCTTTCGTGAATCCCCCAGGTTCTCAGAGAGTTTTC 587
||||| ||||||||||||||||||||||||||||||
Sbjct 702 TCTTTTGTGAATCCCCCAGGTTCTCAGAGAGTTTTC 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5