BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933986

Length=340
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33847.1 | Symbols:  | unknown protein; LOCATED IN: chloropl...   427    3e-119


> AT2G33847.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins 
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:14318964-14320591 REVERSE LENGTH=667
Length=667

 Score =  427 bits (231),  Expect = 3e-119
 Identities = 266/283 (94%), Gaps = 2/283 (1%)
 Strand=Plus/Plus

Query  1    ACGAGAATCGGAAACTTTCGATGTCCGCCGCCAGATCCGTCCTCCGTTCCGGTGTTAGCC  60
            ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct  50   ACGAGAATCGGGAACTTTCAATGTCCGCCGCCAGATCCGTCTTCCGTTCCGGTGTTGGCC  109

Query  61   GAGCCGTCGTTGCCGCATTGAGGTCGACGAAA-CCTGTGCCGTCTTTTGCGCGGTCTTCG  119
            |||||| ||||||||| || |||||||| ||| ||| ||||||||| |||||||||||||
Sbjct  110  GAGCCGCCGTTGCCGCGTTAAGGTCGAC-AAAGCCTATGCCGTCTTCTGCGCGGTCTTCG  168

Query  120  TTTAAGTTGCCTAAACAGAGCCCACTCTCTCACCGCATTTTCAGGTCTCCGGTGGAATTG  179
            |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct  169  TTTAAGTTGCCTAAACAGAGTCCTCTCTCTCACCGCATTTTCAGATCTCCGGTGGAATTG  228

Query  180  AGCTGCTGCGTCGAGACGATGCTTCCGTACCACACGGCCACTGCTTCTGCTTTGCTCAAT  239
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  229  AGCTGCTGCGTCGAGACGATGCTACCGTACCACACGGCCACTGCTTCTGCTTTGCTCAAT  288

Query  240  TCGATGCTCTCAGTTTCAGGGCGCTCCATTTGGACTCTCCAAG  282
            |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  289  TCGATGCTTTCAGTTTCAGGGCGCTCCATTTGGACTTTCCAAG  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15884608684


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5