BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg933988

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33855.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   680    0.0  


> AT2G33855.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14324309-14325192 
REVERSE LENGTH=884
Length=884

 Score =  680 bits (368),  Expect = 0.0
 Identities = 427/456 (94%), Gaps = 2/456 (0%)
 Strand=Plus/Plus

Query  1    AGAAAACGTAATCCAAGCCAATGGAGGAGACGACATGGGAACAGAGATTACAAGCGGTGA  60
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct  22   AGAAAACGTAATCCAAGCCAATGGAGGAGACGACATGGGGACAGAGAATACAAGCGGTGA  81

Query  61   CACACATACTCACAAACCCAACAACGAAACCATCACTTCACTCTCAATTCTTCATCGGAA  120
            |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  82   CACATATCCTCACAAACCCAACAACGAAACCATCACTTTACTCTCAATTCTTCATCGGAG  141

Query  121  CCCTAATTCCAAACTACATATCGTGGGATTACCCTCCGATCTATTCGCCGTCGCATCTCC  180
            || |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  142  CCATAATTCCAAACTACGTATCGTGGGATTACCCTCCGGTCTATTCGCCGACGCATCTCC  201

Query  181  GTCAATGGTGGGTTTCTCAATTCTTCAAAAGGGTGTCGAGATTCGGACTTCCTGATACTT  240
            ||||||||||||||||||| |||||||||||||| |||||||| || || |||||||| |
Sbjct  202  GTCAATGGTGGGTTTCTCAGTTCTTCAAAAGGGTATCGAGATTTGGGCTGCCTGATACAT  261

Query  241  CTTGGAGGTCGAATTGTCCGTATTATCAGCCGCCGGCGGCGGTTATGGCCGTCggagttg  300
            | |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  262  CGTGGAGGTCGAATAGCCCGTATTATCAGCCACCGGCGGCGGTTATGGCTGTCGGAGTTG  321

Query  301  aggaagggaaat-ggggaagagaagagaggagagagtatgcgaggaagaggttgaggagg  359
            |||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct  322  AGGAAGGGAAATGGGGGAA-AGAGGAGAGGAGAGAGTATGCGAGGAAGAGGCTGAGGAGG  380

Query  360  aagaaACTGGTGAATGAAGTGAATCCATACATTCCTCTCTTAGTTCCGAATTTGCTTTTG  419
            |||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  381  AAGAGATTGGTGAATGAAGTGAATCCATATATTCCTCTTTTAGTTCCGAATTTGCTTTTG  440

Query  420  TTTACTCTCTTGTTATGGGATCCTCTTCCTGAGTAA  455
            ||||||||||||||||||||||||||||||||||||
Sbjct  441  TTTACTCTCTTGTTATGGGATCCTCTTCCTGAGTAA  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5