BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933989
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3 fa... 1469 0.0
> AT2G33860.1 | Symbols: ETT, ARF3 | Transcriptional factor B3
family protein / auxin-responsive factor AUX/IAA-related | chr2:14325269-14328978
REVERSE LENGTH=2367
Length=2367
Score = 1469 bits (795), Expect = 0.0
Identities = 935/1001 (93%), Gaps = 15/1001 (1%)
Strand=Plus/Plus
Query 813 CTCATGCCATATCAACTCATAGCGTTTTCAGCATTTACTACAACAAATCATAATTGGGCA 872
||||||||||||| || ||||||||||||||||||| ||||||| | || ||||
Sbjct 1222 CTCATGCCATATCGACCCATAGCGTTTTCAGCATTTCCTACAAC----CCCAA---GGCA 1274
Query 873 AGCTGGTCAAATTTCATAATCCCTGCACCAAAGTTCTTGAAGATTGTTGACTATCCATTT 932
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1275 AGCTGGTCAAACTTCATAATCCCTGCACCAAAGTTCTTGAAGGTTGTTGACTATCCCTTT 1334
Query 933 TGCATTGGTATGAGATTTAAAGCGAGGGTTGAGTCTGAAGATGCCTCTGAGAGAAGATCC 992
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1335 TGCATTGGGATGAGATTTAAAGCGAGGGTTGAATCTGAAGATGCATCTGAGAGAAGATCC 1394
Query 993 CCTGGGATTATAACTGGTATCAGCGACTTGGATCCTATCAGGTGGCCTGGTTCAAAATGG 1052
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1395 CCTGGGATTATAAGTGGTATCAGCGACTTGGATCCAATCAGGTGGCCTGGTTCAAAATGG 1454
Query 1053 AGATGCCTTCTGGTAAGGTGGGATGACATTGAT-GCGAATGGACATCAACAGCGCGTCTC 1111
||||||||| ||||||||||||| ||||||| | || ||||| ||||||||||| |||||
Sbjct 1455 AGATGCCTTTTGGTAAGGTGGGACGACATTG-TGGCAAATGGGCATCAACAGCGTGTCTC 1513
Query 1112 ACCATGGGAGATCGAACCATCTGGTTCAATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1171
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1514 GCCATGGGAGATCGAACCATCTGGTTCCATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1573
Query 1172 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGACATTCCTGTCTCTGAGGG 1231
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1574 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGATATCCCTGTCTCTGAGGG 1633
Query 1232 GATTCGCGCCACAGACTTTGAGGAATCTTTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1291
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1634 GATTCGCGCCACAGACTTTGAGGAATCATTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1693
Query 1292 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1753
Query 1352 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGGTTCCATAAGGTCTTGCAAGGTCAAGA 1411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1754 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGTTTCCATAAGGTCTTGCAAGGTCAAGA 1813
Query 1412 AACAGTTCCCGCTTACTCAATAACCGATCATC--C-GCAGCACGGGTTGAGCCAGAGGAA 1468
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1814 AACAGTTCCCGCCTACTCAATAACCGATCATCGGCAGCAGCACGGGTTGAGCCAGAGGAA 1873
Query 1469 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACTCGTATCCTCCCCCCATCTGTGTCATC 1528
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1874 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACACGTATCCTCCCCCCATCTGTATCATC 1933
Query 1529 ATCACCCTCTTCCGTCTTGATAACCAACGCAAACAGTCCTAACGGACGTCTAGAGGATCA 1588
||||||||||||||||||| | |||||| | |||||||||||||||||||| || || ||
Sbjct 1934 ATCACCCTCTTCCGTCTTGCTTACCAACTCGAACAGTCCTAACGGACGTCTGGAAGACCA 1993
Query 1589 TCACGGAGGCCCAGGCAGGTGCAGACTGTTTGGTTTCCCGTTAACCGAGGAAACCACAGC 1648
||||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1994 TCACGGAGGTTCAGGCAGATGCAGGCTGTTTGGTTTCCCATTAACCGACGAAACCACAGC 2053
Query 1649 AGTTGCATCTGCGACAGTTGTCCCATGTGTTGACGGGAATTCCATAAAAGGTGCTTCAGC 1708
||||||||||||||| | |||||| || ||||| ||||||||||| |||||||| |||||
Sbjct 2054 AGTTGCATCTGCGACGGCTGTCCCCTGCGTTGAAGGGAATTCCATGAAAGGTGCGTCAGC 2113
Query 1709 TGTTCAAAGCAATCATCATCATTCGCAGGGAAGAGACATCTATGCAATGAGAGACATGTT 1768
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2114 TGTTCAAAGCAATCATCATCATTCGCAAGGAAGGGACATCTATGCAATGAGAGACATGTT 2173
Query 1769 GCTAGACATTGCTCTCTAG--GG-TTCTGTGGTTTATGTGT 1806
||||||||||||||||||| || |||| |||||| |||||
Sbjct 2174 GCTAGACATTGCTCTCTAGAAGGGTTCTTTGGTTTCTGTGT 2214
Score = 1306 bits (707), Expect = 0.0
Identities = 785/821 (96%), Gaps = 12/821 (1%)
Strand=Plus/Plus
Query 1 TCTCTGTTTCTCTCTCTTTAATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TCTCTGTTTCTCTCTCTTTAATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 405
Query 61 AAGATGAAACACAAACGC-AA-A-CG-C--C-G--TCTGGGTCTGTCTCGCCTACTTCGT 111
|||| ||||| ||||||| || | || | | | |||||||||||||| ||||||||||
Sbjct 406 AAGACGAAACGCAAACGCAAACACCGTCTTCAGCTTCTGGGTCTGTCTCTCCTACTTCGT 465
Query 112 CTTCTTCAGCAGCGTCTGCGTCTGTGGTGTCTTCGAGTTCAGTTGGAGGAGGGGTTTGTT 171
|||||| |||| |||| ||||||||||||||||| ||| | ||| |||||||||||||
Sbjct 466 CTTCTT---CAGCTTCTGTGTCTGTGGTGTCTTCGAATTCTGCTGGTGGAGGGGTTTGTT 522
Query 172 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 582
Query 232 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 642
Query 292 GGCTACCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 351
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GGCTCCCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 702
Query 352 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCCGAGGACATTGAGCGGAAGG 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 703 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCAGAGGACATTGAGAGGAAGG 762
Query 412 TGCGTGAGGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TGCGTGAAGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 822
Query 472 CTAATACTCCTCACATGTTTTGCAAAACCCTCACTGCTTCTGATACAAGCACCCATGGTG 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 823 CTAATACTCCTCACATGTTTTGCAAAACCCTTACTGCTTCTGATACAAGCACCCATGGTG 882
Query 532 GCTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 591
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GTTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 942
Query 592 CCCGTCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCTTGGAGTGGCGATTTCGCC 651
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 943 CCCGGCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCCTGGAGTGGCGATTTCGCC 1002
Query 652 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCATTTGTGA 711
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1003 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCGTTTGTGA 1062
Query 712 ACAAGAAGAAGCTTGTTTCCGGAGATGCTGTGCTTTTCCTTAGAGGTGATGATGGCAAAC 771
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 1063 ACAAGAAGAAGCTTGTCTCTGGTGATGCTGTGCTTTTCCTTAGAGGAGATGATGGCAAAC 1122
Query 772 TGCGATTAGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 812
||||| | |||||||||||||||||||||||||||||||||
Sbjct 1123 TGCGACTGGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89407170645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5