BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg933994 Length=863 Score E Sequences producing significant alignments: (Bits) Value AT2G33990.1 | Symbols: iqd9 | IQ-domain 9 | chr2:14360276-14362... 1236 0.0 > AT2G33990.1 | Symbols: iqd9 | IQ-domain 9 | chr2:14360276-14362241 REVERSE LENGTH=1222 Length=1222 Score = 1236 bits (669), Expect = 0.0 Identities = 805/865 (93%), Gaps = 31/865 (4%) Strand=Plus/Plus Query 1 TTTTGGTGACAATTGATAGACTCTGAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 178 TTTTGGTGACAATTGATAGACTCTAAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 237 Query 61 AGATTGAAGAAGAGTAAACAAGGAACCATCAAAAGCGAGAAGaaaaaaaCTAGTGCTGTG 120 ||||||||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct 238 AGATTGAAGAAGAGTAAACAAGGAA-C-T-------GAAAAGAAAAAAACTAGTGCTGTG 288 Query 121 AAACC---AAAAGGTTCCAAGAAGAAGGGTACTCATTCTTCATCACTAGTTACTCGAAGT 177 ||||| ||||||||||||||||||||| | | |||||||||||||||| ||| Sbjct 289 AAACCAAAAAAAGGTTCCAAGAAGAAGGG---T-A-----CATCACTAGTTACTCGTAGT 339 Query 178 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 399 Query 238 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTGTCAACTGAGAAACATTCTGTGAAG 297 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 400 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAACTGAGAAACAATCTGTGAAG 459 Query 298 AACCAAGCGGTTGTCACATTGCGGTATCTCCACTCATGGAGTAAAATACAGTCGGAGATA 357 |||||||| || ||||||||| ||||||| ||||||||||||||||||||||| |||||| Sbjct 460 AACCAAGCTGTGGTCACATTGAGGTATCTTCACTCATGGAGTAAAATACAGTCAGAGATA 519 Query 358 AAGGCTCGCCGAGTTTGTATGGTAACCGAATGGCGACTGAAGAATAAGAGATTAGAACAT 417 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 520 AAGGCTCGCCGAGTTTGCATGGTAACCGAATGGCGACTGAAGAATAAAAGATTAGAGCAT 579 Query 418 CAGCAAAAGCTTGAAGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 477 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 CAGCAAAAGCTTGAGGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 639 Query 478 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCTACGATTAAGCGAGAA 537 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 640 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAA 699 Query 538 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCCGATGGTAAGACTCAGTGGCTG 597 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 700 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCTGATGGTAAGACTCAGTGGTTG 759 Query 598 GGGAGTTATGAGCTGGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATTTCT 657 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 760 GGAAGTTATGAGCTAGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATATCT 819 Query 658 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 820 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 879 Query 718 GTTTGTTGCAACTCAAATTCACCGGCGAAGAGAACAGTGTCATTATTATCAGTTCGAGCC 777 | | |||||||||||| || ||||||||||||||||||| |||||||| |||| Sbjct 880 G--------A-CTCAAATTCACCAGCAAAGAGAACAGTGTCATTATCATCAGTTCCAGCC 930 Query 778 AAAGCTCCATTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTCCCGGGA 837 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 931 AAAACTCCGTTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTTCCAGGT 990 Query 838 GCTTGAAGTGAAGTTAA-CTTTGTT 861 ||||||||||||||||| ||||||| Sbjct 991 GCTTGAAGTGAAGTTAAACTTTGTT 1015 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42096215186 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5