BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933994
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33990.1 | Symbols: iqd9 | IQ-domain 9 | chr2:14360276-14362... 1236 0.0
> AT2G33990.1 | Symbols: iqd9 | IQ-domain 9 | chr2:14360276-14362241
REVERSE LENGTH=1222
Length=1222
Score = 1236 bits (669), Expect = 0.0
Identities = 805/865 (93%), Gaps = 31/865 (4%)
Strand=Plus/Plus
Query 1 TTTTGGTGACAATTGATAGACTCTGAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 TTTTGGTGACAATTGATAGACTCTAAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 237
Query 61 AGATTGAAGAAGAGTAAACAAGGAACCATCAAAAGCGAGAAGaaaaaaaCTAGTGCTGTG 120
||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 238 AGATTGAAGAAGAGTAAACAAGGAA-C-T-------GAAAAGAAAAAAACTAGTGCTGTG 288
Query 121 AAACC---AAAAGGTTCCAAGAAGAAGGGTACTCATTCTTCATCACTAGTTACTCGAAGT 177
||||| ||||||||||||||||||||| | | |||||||||||||||| |||
Sbjct 289 AAACCAAAAAAAGGTTCCAAGAAGAAGGG---T-A-----CATCACTAGTTACTCGTAGT 339
Query 178 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 399
Query 238 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTGTCAACTGAGAAACATTCTGTGAAG 297
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 400 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAACTGAGAAACAATCTGTGAAG 459
Query 298 AACCAAGCGGTTGTCACATTGCGGTATCTCCACTCATGGAGTAAAATACAGTCGGAGATA 357
|||||||| || ||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 460 AACCAAGCTGTGGTCACATTGAGGTATCTTCACTCATGGAGTAAAATACAGTCAGAGATA 519
Query 358 AAGGCTCGCCGAGTTTGTATGGTAACCGAATGGCGACTGAAGAATAAGAGATTAGAACAT 417
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 520 AAGGCTCGCCGAGTTTGCATGGTAACCGAATGGCGACTGAAGAATAAAAGATTAGAGCAT 579
Query 418 CAGCAAAAGCTTGAAGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CAGCAAAAGCTTGAGGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 639
Query 478 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCTACGATTAAGCGAGAA 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAA 699
Query 538 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCCGATGGTAAGACTCAGTGGCTG 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 700 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCTGATGGTAAGACTCAGTGGTTG 759
Query 598 GGGAGTTATGAGCTGGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATTTCT 657
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 GGAAGTTATGAGCTAGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATATCT 819
Query 658 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 879
Query 718 GTTTGTTGCAACTCAAATTCACCGGCGAAGAGAACAGTGTCATTATTATCAGTTCGAGCC 777
| | |||||||||||| || ||||||||||||||||||| |||||||| ||||
Sbjct 880 G--------A-CTCAAATTCACCAGCAAAGAGAACAGTGTCATTATCATCAGTTCCAGCC 930
Query 778 AAAGCTCCATTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTCCCGGGA 837
||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 931 AAAACTCCGTTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTTCCAGGT 990
Query 838 GCTTGAAGTGAAGTTAA-CTTTGTT 861
||||||||||||||||| |||||||
Sbjct 991 GCTTGAAGTGAAGTTAAACTTTGTT 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5