BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg933996
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1264 0.0
AT1G29010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 73.1 4e-12
> AT2G34010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G29010.1);
Has 32 Blast hits to 31 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 25; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:14368856-14370438
FORWARD LENGTH=1221
Length=1221
Score = 1264 bits (684), Expect = 0.0
Identities = 851/927 (92%), Gaps = 30/927 (3%)
Strand=Plus/Plus
Query 18 ACTTGAGAACAATGTGTAGTAACAACAACACAAGTAGTGGAAGCTATGGAGACTTACAGT 77
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3 ACTTGAGAACAATGTGTAGTAACAACAACACAAGTAGTGGAAGCTATGGAGAGTTACAGT 62
Query 78 TACATGATGAGTACTCTGGTTCTTGTCGGAAGAAACAGAAGAAAGACAAAGTACGACGAA 137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TACATGATGAGTCCTCTGGTTCTTGTCGGAAGAAACAGAAGAAAGACAAAGTACGACGAA 122
Query 138 GAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTTCAAGACGAGTACAAATCTCCAC 197
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 123 GAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCTTCAAGAAGAGTACAAACCTCCAC 182
Query 198 TTTCT-C--CT--T-CATTACCAAACATAGATCACCATCAT-AC--TCTCTTTGCTCCGG 248
||||| | || | ||||||||||||| ||||| |||||| || ||||||||||||||
Sbjct 183 TTTCTTCGTCTCCTTCATTACCAAACATTGATCATCATCATCACACTCTCTTTGCTCCGG 242
Query 249 CTAGTAGCGGCTATGATTTAGTGACGA-TTCCTCCAAACTTTTCTTTCCCGGAGAACCTT 307
||||||||| |||||||||||||| || ||| |||||||||||||||||| ||||| |||
Sbjct 243 CTAGTAGCGTCTATGATTTAGTGATGACTTC-TCCAAACTTTTCTTTCCCCGAGAAACTT 301
Query 308 CCGTC---GTTACCGGTTTTCCCGCATT-CGTACGGATCTTTGATTCCTCCGGCGCCGGT 363
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 302 GCGTCAACGTTACCGGTTTTCCCG-ATTTCGTACGGATCTTTGATTCCTCCGGCGCCGAT 360
Query 364 TTTTCAGAGGAACCAACATTCTCTAATGATGAATCTACCAAATCCATCTCCAGGAACAGG 423
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 361 TTTTCAGAGGAGCCAACATTCTCTAATGATGAATCTACCGAATCCATCTCCAGGAGCAGG 420
Query 424 AAGATTTTATCAATTCATAGAGCCCCCTTCAAACCAAAGATCTTGCGTCGATTCTGTCTC 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 AAGATTTTATCAATTCATAGAGCCCCCTTCAAACCAAAGATCTTGCGTCGATTCTGTGTC 480
Query 484 TCAGTTTCTTGAGGAAGAAAATAAAAAGATGGTCACTGCGAAGAAGAGGCCATGGCATTT 543
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct 481 TCAGTTTCTTGAAGAAGAAAATAAAAAGATATTCACTGCTAAGAAGAGGCCATGGCCTTT 540
Query 544 TCTCACAGACACCACGAAACCTAGCGTTGGACCAACCACAAC-TACAAGAATCATAAGG- 601
|||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||||||||
Sbjct 541 TCTCACTGACACCACGAAACCTAGTGTTGGACCAACCACAACAT-CAACAATCATAAGGC 599
Query 602 -G-ATGCAATACAAAACCGGTCAATGGATGTAAGTCCGGTTCAAGAGACCGGTACAACAA 659
| |||| | ||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 600 CGGATGCGACACAAAACCGGTCAATGGGTATAACTCCGGTTCAAGAGACCGGTACAACAA 659
Query 660 TTAGCAATCCCATCGCCATTGATTCGCCTACGTCCATTCCACGTCATTACCCGAGGTTTA 719
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 CTAGCAACCCCATCGCCATTGATTCACCTACGTCCATTCCACGTCATTACCCGAGGTTTA 719
Query 720 TCCCGCTTGGCTTACAGTATGAACAACAACCACAAAAA-TA-----CTTGGATGAGAATA 773
|||||||||| ||||||||||||||||||| ||||||| || ||||||||||| ||
Sbjct 720 TCCCGCTTGGTTTACAGTATGAACAACAACAACAAAAACTAAAAGACTTGGATGAGACTA 779
Query 774 TGCAATGGAGAAGTAAAAAGCCGTTCTATAGCTTCATACCCTCTGGTGATCCCAGCAATG 833
|||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 780 TGCAATGGAGAAGTAAGAAGCCTTTCTACAGCTTTATACCCTCTGGTGATCCGAGCAATG 839
Query 834 ATGACCGAGAACAACGACCATGTGACCGATATGAATCAGCTGCTGCTGATCATGGAATTG 893
|||||| |||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 840 ATGACCAAGAACAACGACCATGTGACCTATTTGGATCAGCTGCTG---ATCATGGAATTG 896
Query 894 ATCTCAGCCTTAAGTTATAGAGATTTT 920
|||||| ||||||||||||| ||||||
Sbjct 897 ATCTCAACCTTAAGTTATAGGGATTTT 923
> AT1G29010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34010.1);
Has 18 Blast hits to 17 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10117715-10119085
FORWARD LENGTH=1015
Length=1015
Score = 73.1 bits (39), Expect = 4e-12
Identities = 52/58 (90%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 118 GAAAGACAA-AGTACGACGAAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 174
|||| | || ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 98 GAAAAAAAAGAGTCCCACGTAGAGGACCTGGTGTTGCTGAACTCGAGAAGATCCGTCT 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5