BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934010
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34140.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 824 0.0
AT1G29160.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 405 2e-112
> AT2G34140.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:14413758-14414765 REVERSE LENGTH=1008
Length=1008
Score = 824 bits (446), Expect = 0.0
Identities = 511/542 (94%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 19 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATTGCATTTA 78
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTTTCATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACTATTGCATTTA 120
Query 79 ACTCTC-ACACAATAAAATATGAAGAAGAGAAACAACCACCGGAGCAAGAGGCTACAACA 137
|| ||| | ||||||||| |||||||||||| ||| || ||||||||||| || |||| |
Sbjct 121 ACACTCGA-ACAATAAAAAATGAAGAAGAGACACACCCGCCGGAGCAAGAAGCCACAATA 179
Query 138 ACCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCAGACAAGATCATA 197
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 180 GCCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCGGATAAGATCATA 239
Query 198 GCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAATAACTATAACGTT 257
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 240 GCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAACAACTACAACGTT 299
Query 258 AATCAGCCTCGACACTTTTGTAAAGACTGCCACCGTTACTGGACCGCCGGTGGTGCACTT 317
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 AATCAGCCTCGACACTTTTGTAAAGGCTGCCACCGTTACTGGACCGCCGGTGGTGCACTC 359
Query 318 CGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCAGGCCGTGTCGTGGTT 377
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 360 CGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCTGGTCGTGTCGTGGTT 419
Query 378 GGTATGCTTGGAGATGGAAATGGGGTTCATCAAGTCGAGCTTATAAATGGCTTGCTCGTT 437
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 420 GGTATGCTTGGAGATGGAAATGGTGTTCGCCAAGTCGAGCTTATAAATGGCTTGCTCGTT 479
Query 438 GAGGAGTGGCAGCATGCCGCAGCCGCAGCTCACGGTGGTTTCCGGCATGATTTTCCTATG 497
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 480 GAGGAGTGGCAGCATGCCGCAGCCGCAGCTCACGGTAGTTTCCGGCATGATTTTCCCATG 539
Query 498 AAGCGGCTCCGGTGTTACTCCGACGGTCAATCTTGCTGATTATTATTGTT--CTCT-TTT 554
|||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||
Sbjct 540 AAGCGGCTCCGGTGTTACTCCGACGGTCAATCGTGCTGATTATAATTATTTACTCTCTTT 599
Query 555 TT 556
||
Sbjct 600 TT 601
> AT1G29160.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:10183797-10184324 REVERSE LENGTH=528
Length=528
Score = 405 bits (219), Expect = 2e-112
Identities = 439/538 (82%), Gaps = 43/538 (8%)
Strand=Plus/Plus
Query 24 ATGGCGACTCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATTGCATTTAA---C 80
|||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1 ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCC 60
Query 81 -TC-TCACAC--A--ATAAAATATGAAGAAG-AG--A-AACAAC--CA-CCGGAGCAAGA 127
| |||||| | |||||| | |||| || || | |||||| || || |||| | |
Sbjct 61 AACATCACACAGACGATAAAAAAAGAAG-AGCAGCAACAACAACAACAGCCAGAGCTACA 119
Query 128 GGCTACAACAACCGTTAGATCATCATCATCATCGGATCTGACGGCCGAGAAGCGTCCAGA 187
|| |||||| ||||||||||| | | ||||||||||||||||| ||||||||||||||
Sbjct 120 AGCAACAACAGCCGTTAGATCA-C--CCTCATCGGATCTGACGGCTGAGAAGCGTCCAGA 176
Query 188 CAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAGACAAAGTTCTGTTACTTCAATAA 247
|||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 177 CAAGATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAA 236
Query 248 CTATAACGTTAATCAGCCTCGACACTTTTGTAAAGACTGCCACCGTTACTGGACCGCCGG 307
||| ||||||||||| || ||||||| || |||| || || |||||||||||||||||
Sbjct 237 CTACAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGG 296
Query 308 TGGTGCACTTCGGAACGTTCCCGTCGGCGCCGGTCGTCGGAAGTCCAAACCACCAGGCCG 367
||| || || ||||| ||||||||||| ||||||||||||||||| ||||| || || ||
Sbjct 297 TGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACG 356
Query 368 TGTC-GT-GGTT-GGT-A--TGCTTGGAGATG-GAAATGG-G--GTTCATCAAGTCGAGC 417
|||| || |||| | | | ||||||||| || | | ||| | ||| |||| |||||||
Sbjct 357 TGTCGGTGGGTTCGCTGAGTTGCTTGGAGCTGCG-ACTGGAGCTGTTGATCAGGTCGAGC 415
Query 418 TTATAAATGGC-TTGCTCGTTGAGGAGTGGCAGCATGCCGC-AGCCGCAG-CTCACGGTG 474
|| || || ||||| || || |||||| || | || || | | || | |||||||||
Sbjct 416 ---TAGAT-GCTTTGCTAGTGGAAGAGTGG-AG-A-GCTGCTA-CGGC-GTCTCACGGTG 466
Query 475 GTTTCCGGCATGATTTTCCTATGAAGCGGCTCCGGTGTTACTCCGACGGTCAATCTTG 532
||||||||||||||||||| ||||| ||||||| |||||| |||| |||||||||||
Sbjct 467 GTTTCCGGCATGATTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5