BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934016
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34200.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1000 0.0
> AT2G34200.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:14440648-14442005 FORWARD LENGTH=968
Length=968
Score = 1000 bits (541), Expect = 0.0
Identities = 623/661 (94%), Gaps = 11/661 (2%)
Strand=Plus/Plus
Query 44 TGATGTCAAGGGTCAGACTAGTGACTCTGTTTCAAAAAAGGTGTTGATTGAAGAAGAGGA 103
|||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 206 TGATGTTAAGGGTCAGACCAGTGACTCTGTATCAAAAAAGGTGTTGATTGAGGAAGAGGA 265
Query 104 AGATGTGAAGAAACCACAAC------AAGAAAATGATTCAAGAATGGACAAAGACGGTAT 157
|||||| ||||||||||||| ||||||||||||||||||||| |||||| | | |
Sbjct 266 AGATGTAAAGAAACCACAACAGGGAAAAGAAAATGATTCAAGAATGGCCAAAGATGTTGT 325
Query 158 TAGCTGCAGTAGTAACATTGCAGCTCATGCTGTTCATGAGGAAGTTGGGGATAATGTTAG 217
||| ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||
Sbjct 326 TAGTTGCAGTAGTAACATTTCAGCTCATGTTGTTCATGAGGAAGTTGCGGATAATGTTAC 385
Query 218 TGCGGTAAGCTGCAACGAGGCAGAGAGTGATACT-TCGAAAGCAAAGGCGAAGGAGTTCC 276
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 386 TGCGGTAAGCTGCAACGAGGCAGAGAGTGATA-TATCGAAAGCAAAGGCGAAGGAGTTCC 444
Query 277 ACACTATTGATTTGAGTGGTGGAGGAGAAAGAATCTGTAGGATTTGTCATTTTGGTTCTG 336
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACACTATTGATTTGAGTGGTGTAGGAGAAAGAATCTGTAGGATTTGTCATTTTGGTTCTG 504
Query 337 ATCAATCACCTGAGGCTTCTGGTGATGATAAGTCAGTAAGTCCGGAGTTGATTGAGATTG 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ATCAATCACCTGAGGCTTCTGGTGATGATAAGTCAGTAAGTCCGGAGTTGATTGAGATTG 564
Query 397 GTTGCAAATGCAAAAACGAGCTTGGCCTTGCACATTTCCACTGCGCAGAAGCTTGGTTCA 456
|||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 565 GTTGCAAATGTAAAAACGAGCTTGGCCTTGCACATTTCCATTGCGCTGAAGCCTGGTTCA 624
Query 457 AGTTAAGAGGGAACAGTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAA 516
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 AGTTAAGAGGAAACAGTGTGTGTGAAATCTGCGGTTGCACAGCGAAGAATGTTACAGTAA 684
Query 517 GGTTGATGGAGGATTGGAGCGGCGAAAGGGACAATACATTGGAAGAGAGAAGAAGACGAG 576
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 685 GGTTGATGGAGGATTGGAGCGGCGAAAGAGACAATACATTGGATGGGAGAAGAAGACGAG 744
Query 577 GAAGAGGACAATCTTTCTGCATCTTCATGGTTTTTCTGCTCACTATC-TATTTGCTTCAT 635
||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 745 GAAGAGGACAATCTTGCTGCATCTTTATGGTTTTTCTGCTCACTATCCT-TTTGCTTCAT 803
Query 636 TGGTTTTTCAAAAAGATTAGCGGTTACTACCAAAACACTTGAATAAAGTATATCTGTTGG 695
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 804 TGGTTTTTCAAAAAGATTAGTGGTTACTACCAAAACACTTGAATAT-GTATATCTGTTGG 862
Query 696 T 696
|
Sbjct 863 T 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33757346784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5