BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934024
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34260.1 | Symbols: | transducin family protein / WD-40 rep... 1629 0.0
> AT2G34260.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:14465849-14468531 FORWARD LENGTH=1227
Length=1227
Score = 1629 bits (882), Expect = 0.0
Identities = 1021/1085 (94%), Gaps = 22/1085 (2%)
Strand=Plus/Plus
Query 21 ATGGAGATCGATTTGGGAGCGAACGCGTTCGGTATCGACTTCCATCCATCGACGAATCTA 80
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 51 ATGGAGATCGATTTGGGAGCTAACGCGTTTGGTATCGACTTCCATCCATCGACGAATCTA 110
Query 81 ATAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCCTCA 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 111 GTAGCTGCTGGTCTCATCGATGGCCACTTGCATCTATACCGATACGACTCAGATTCTTCA 170
Query 141 CTTGTCAGGGAACGTAAAGTTCGAGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 171 CTTGTCAGGGAACGTAAAGTTCGTGCCCATAAGGAGTCTTGTAGAGCTGTTCGGTTCATT 230
Query 201 GATGATGGCCAAAGAATCGTCACAGCTTCAGCTGATTGCTCAATTCTAGCCACTGATGTA 260
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 231 GATGATGGCCAAAGAATCGTCACTGCTTCAGCTGATTGTTCAATTCTAGCAACTGATGTA 290
Query 261 GAGACTGGTGCTAAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 320
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAGACTGGTGCGCAGGTTGCACATCTTGAGAATGCTCACGAGGATGCTGTTAATACTTTG 350
Query 321 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGGTTTGG 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 ATTAATGTTACTGAGACAACTATCGCTTCAGGAGATGATAAAGGCTGCGTTAAGATTTGG 410
Query 381 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GATACAAGACAGCGCTCTTGCTCTCATGAGTTTAATGCACACGAGGATTACATTTCTGGC 470
Query 441 ATGACCTTTGCGTCTGATTCAATGAAGCTA---GT-----GTGGAGACGGTACCCTGTCT 492
||||||||||| |||||||||||||||||| || |||||||||| || |||||
Sbjct 471 ATGACCTTTGCATCTGATTCAATGAAGCTAGTGGTAACAAGTGGAGACGGGACTTTGTCT 530
Query 493 GTCTGT-ATCTCAG-ACAAAGTAAGGTGCAATCTCAGTCTG-ATTTTCTGAAGACGAACT 549
|||||| |||| || || |||||||| ||||||||||| | |||||||||||| |||||
Sbjct 531 GTCTGTAATCTTAGAAC-GAGTAAGGTCCAATCTCAGTCCGAATTTTCTGAAGATGAACT 589
Query 550 ACTTTC---TG-T-TAA--AA-AATGGCCGTAAAGTTATTTGTGGAACTCAGAATGGTAC 601
|||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 590 ACTTTCTGTTGTTATAATGAAGAATGGCCGTAAAGTTATCTGTGGAACTCAGAATGGTAC 649
Query 602 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTAGC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 650 TCTCTTGTTGTATTCATGGGGATTTTTCAAGGATTGCAGCGATCGGTTTGTTGATCTCGC 709
Query 662 TCCAAATTCAGTTGATACTCTATTGAAGCTCGATGAGGACAGACTTATCACTGGGTGTGA 721
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 710 TCCAAATTCCGTTGATGCTCTACTGAAGCTCGATGAGGACAGACTTATCACTGGATGTGA 769
Query 722 TAATGGAATACTTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCAATAGGGGC 781
|||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 770 TAATGGAATAATTAGCCTTGTTGGAATACTGCCCAACAGAATCATACAGCCGATTGGGTC 829
Query 782 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAACAAATTTCTCGGTAGCAC 841
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 830 ACACGACTACCCTATCGAAGATCTCGCTCTCTCGCATGATAAGAAATTTCTCGGTAGCAC 889
Query 842 AGCTCATGACAGTATGCTGAAGCTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGG 901
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 890 AGCTCATGACAGTATGCTGAAGTTGTGGAACCTAGAAGAGATTCTAGAAGGTTCTAATGT 949
Query 902 CAACTCGGGGAATGCATCTGGAGCTGCAGGAGACAGTGACAGTGACAAGGATGGGATGGA 961
|||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||
Sbjct 950 CAACTCTGGGAATGCATCTGGAGCTGCAGAAGACAGTGACAGCGACAATGATGGGATGGA 1009
Query 962 CCTTGACAATGATTCT-CACAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAC 1020
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CCTTGACAATGATCCTTC-CAAGTCTTCCAAAGGCAGCAAGAGGAAAACAAAAAGTAAAG 1068
Query 1021 CGAATACGCTCAACTCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGTTTC 1080
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1069 CGAATACGCTGAACGCTACAAATAATTTCTTTGCAGACTTATAGATTTTGTTTCAGATTC 1128
Query 1081 AGTCT 1085
|||||
Sbjct 1129 AGTCT 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5