BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934049
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34510.1 | Symbols: | Protein of unknown function, DUF642 |... 1851 0.0
AT1G29980.1 | Symbols: | Protein of unknown function, DUF642 |... 760 0.0
> AT2G34510.1 | Symbols: | Protein of unknown function, DUF642
| chr2:14543997-14546879 REVERSE LENGTH=1470
Length=1470
Score = 1851 bits (1002), Expect = 0.0
Identities = 1166/1246 (94%), Gaps = 7/1246 (1%)
Strand=Plus/Plus
Query 1 TTCACAGAGAAAGAGAGAAAGATGGTGCTTTACAACTACAGTACTTGGAGATTGGTTTCC 60
||||||||||||||||| ||||| ||||||||| | ||| || |||||||| | ||||
Sbjct 129 TTCACAGAGAAAGAGAG--AGATGATGCTTTACAGCAACAATAGTTGGAGATCGAATTCC 186
Query 61 ATTTTAATACTTCTACTTGGTCCCTCCATCGTCGCCGCCGCAGACTCCGCCGGCAAAACT 120
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct 187 ATTTTAATACTTCTACTTGGTCTCTCCATTGTGGCCGCCGCAGACTCCGCCGGCAAAACT 246
Query 121 TTACCGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGACTCCACCGTCAAACGGC 180
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 247 TCACCGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGACACCGCCGTCAAACGGC 306
Query 181 TTCCCTGATGACGCAATCATCGAGGAGTCCTCCGAGATACCGAGCTGGCGATCCGATGGC 240
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 307 TTCCCTGATGACGCAATCATCGAGGACACCTCCGAGATCCCGAGCTGGCGATCCGATGGT 366
Query 241 ACGGTGGAGCTAATCAAATCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCCGAG 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 ACGGTGGAGCTAATCAAGTCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCTGAG 426
Query 301 GGTCGTCACGCCGTCAGATTAGGAAACGATGCAGAAATCAGCCAAGAACTTCCCGTAGAG 360
|| |||||||| || |||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 427 GGCCGTCACGCTGTTAGATTAGGAAACGATGCAGAGATCAGCCAAGAACTTACGGTGGAG 486
Query 361 AAAGGCTCTATCTACTCTGTCACGTTCAGTGCCGCCCGCACATGTGCACAGCTCGAGTCG 420
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 487 AAAGGCTCTATCTACTCCGTCACGTTCAGTGCAGCCCGCACATGTGCACAACTCGAGTCG 546
Query 421 CTGAATGTGTCAGTGGCTTC--C-AATGAACCCATAGCATCACAGACCATTGACTTGCAA 477
|||||||| || || ||||| | ||||||| || ||||| || |||||||||||||||
Sbjct 547 CTGAATGTTTCGGTAGCTTCTTCTGATGAACCTATCGCATCGCAAACCATTGACTTGCAA 606
Query 478 ACGGTCTACAGCGTTCAAGGGTGGGATCCATATGCATGGGCGTTTGAAGCAGTGGTTGAT 537
||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 607 ACGGTGTACAGCGTTCAAGGATGGGATCCATATGCATGGGCGTTTGAAGCGGTTGTGGAT 666
Query 538 CGCGTCCGGTTGGTTTTTAGGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATC 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CGCGTCCGGTTGGTTTTTAAGAACCCTGGCATGGAGGATGATCCTACTTGTGGACCTATC 726
Query 598 ATTGACGACATCGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTG 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ATTGACGACATTGCCGTTAAGAAGCTCTTTACTCCTGATAAACCCAAAGGCAATGCAGTG 786
Query 658 ATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTCAGGAACACGACATTAGGTGTTCTT 717
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 787 ATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTTAGGAACACTACCTTAGGTGTTCTG 846
Query 718 CTTCCGACAAACCTCGACGAAGAAATATCGTCTCTTCCCGGATGGACCGTCGAATCAAAC 777
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 847 CTTCCAACAAACCTCGATGAAGAAATATCGTCTCTTCCTGGATGGACCGTCGAATCGAAC 906
Query 778 CGAGCGGTCCGGTTTATTGACTCAGACCATTTCTCGGTCCCTGAGGGAAAGCGAGCTTTG 837
||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 907 CGAGCAGTACGGTTTATTGACTCAGACCATTTCTCGGTCCCCGAGGGGAAGCGAGCTTTG 966
Query 838 GAGCTTCTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGACAAAGGCGAACATT 897
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GAACTTTTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTTGAGACAAAGGCGAACATT 1026
Query 898 CCGTACAAGCTGTCTTTCTCATTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCC 957
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CCGTACAAGATGTCTTTCTCTTTGGGACACGCAGGGGACAAGTGTAAGGAACCTTTGGCT 1086
Query 958 GTAATGGCTTTTGCCGGAGATCAAGCACAGAACTTTCATTATATGGCGCAGGCGAACTCT 1017
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1087 GTAATGGCTTTTGCTGGAGATCAAGCACAGAACTTTCATTATATGGCGCAAGCAAACTCG 1146
Query 1018 AGTTTCGAAAGATCGGAGTTGAACTTCACGGCGAAAGCTGAACGAACGAGGATCGCCTTC 1077
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1147 AGTTTCGAAAGATCGGAGTTGAACTTCACTGCGAAAGCTGAACGTACGAGGATCGCCTTC 1206
Query 1078 TACAGCATTTATTACAATACGAGGACGGACGACATGAGTTCATTGTGTGGACCTGTGATT 1137
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1207 TACAGCATTTATTACAATACGAGGACGGACGATATGACTTCATTGTGTGGACCTGTGATT 1266
Query 1138 GATGACGTTAAGGTTTGGTTCTCCGGGTCTAGTAGAATTGGATTTGGTTTTCCAG-TTTT 1196
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 1267 GATGACGTTAAGGTTTGGTTCTCCGGGTCTAGTAGAATTGGATTTAGTTTTCC-GCTTTT 1325
Query 1197 TATTCTTCTTTCATTGGTTTTCATCTAGATTGTTCCTGTTCAGAAA 1242
|||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1326 TATTCTTCTTTCTTTGGTTTTCATCTAGATTGTTCCGGTTCAGAAA 1371
> AT1G29980.1 | Symbols: | Protein of unknown function, DUF642
| chr1:10503278-10506117 REVERSE LENGTH=1480
Length=1480
Score = 760 bits (411), Expect = 0.0
Identities = 871/1088 (80%), Gaps = 51/1088 (5%)
Strand=Plus/Plus
Query 125 CGGTCGAAGACGGCTTGGTGGTTAACGGCGACTTTGAGAC-TCCACCGTCAAACGGCTTC 183
|||| || || || || ||| | ||||||||||| || || | ||||||||| |||||
Sbjct 227 CGGTTGAGGATGGTTTAGTGATCAACGGCGACTTCGAAACAT-CACCGTCAAGTGGCTTT 285
Query 184 CCTGATGACGCAATCATC-GA-GGAGTCC-TCCGAGATACCGAGCTGGCGATCCGATGGC 240
||||| |||| | | | | || ||| || ||||| || || |||||| |||| | ||
Sbjct 286 CCTGACGACGGAGT-AACTGACGGA--CCATCCGATATCCCAAGCTGGAAATCCAACGGT 342
Query 241 ACGGTGGAGCTAATCAAA-TCCGGTCAAAAACAAGGCGGGATGATCTTGATCGTGCCC-G 298
|||||||||||||| ||| |||||||||||||||||||| |||||| | || || |||
Sbjct 343 ACGGTGGAGCTAAT-AAATTCCGGTCAAAAACAAGGCGGAATGATCCTCATTGT-CCCAC 400
Query 299 AGGGTCGTCACGCCGTCAGATTAGGAAACGATGCAGAAATCAGCCAAGAACTTCCCGTAG 358
| || |||||||||||| ||||||| ||||| ||||| ||||||||||| || | || |
Sbjct 401 AAGGCCGTCACGCCGTCCGATTAGGGAACGACGCAGAGATCAGCCAAGATCTAACGGTTG 460
Query 359 AGAAAGGCTCTATCTACTCTGTCACGTTCAGTGCCGCCCGCACATGTGCACAGCTCGAGT 418
||||||| | | |||| || ||||||||||| || || ||||| || || || ||||| |
Sbjct 461 AGAAAGGTTTTGTCTATTCAGTCACGTTCAGCGCTGCTCGCACGTGCGCTCAACTCGAAT 520
Query 419 CGCTGAATGTGTCAGT-G-G-CT-TCCAATG-A-AC-C---C-ATA-----GCATCACAG 462
|| | || ||||| || | | || | || | | || | | ||| || || | |
Sbjct 521 CGATAAACGTGTCGGTAGCGTCTGT-GAACGCAGACGCGGACGATATGCTGGCGTCGCGG 579
Query 463 ACCATTGACTTGCAAACGGTCTACAGCGTTCAAGGGTGGGATCCATATGCATGGGCGTTT 522
| | |||| ||||||||| | || ||||||||||||||||| || ||||| |||||||||
Sbjct 580 AACGTTGATTTGCAAACGCTTTATAGCGTTCAAGGGTGGGACCCTTATGCGTGGGCGTTT 639
Query 523 GAAGCAGTGGTTGATCGCGTCCGGTTGGTTTTTAGGAACCCTGGCATGGAGGATGATCCT 582
||||| | | ||||| || ||||||||||||| ||| || || ||||| ||||||||
Sbjct 640 GAAGCGGAAGATGATCATGTACGGTTGGTTTTTAAGAATCCGGGTATGGAAGATGATCCG 699
Query 583 ACTTGTGGACCTATCATTGACGACATCGCCGTTAAGAAGCTCTTTACTCCTGATAAACCC 642
||||||||||| ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 700 ACTTGTGGACCAATCATCGATGACATTGCTATTAAGAAGCTCTTTACTCCTGATAAACCC 759
Query 643 AAAGGCAATGCAGTGATTAATGGAGATTTTGAAGAAGGTCCATGGATGTTCAGGAACACG 702
|||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 760 AAAGATAATGCGGTGATTAATGGAGATTTCGAAGATGGTCCATGGATGTTTAGGAACACG 819
Query 703 ACA-TTAGGTGTTCTT-CTTCCGACAAACCTCGACGAAGAAATATCGTCTCTTCCCGGAT 760
| || |||||| || |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 820 TCTCTT-GGTGTT-TTACTTCCGACAAACCTCGACGAAGAAATCTCGTCTCTTCCTGGTT 877
Query 761 GGACCGTCGAATCAAACCGAGCGGTCCGGTTTATTGACTCAGACCATTTCTCGGTCCCTG 820
|||| || ||||| ||| ||||||| |||||| ||||||| || || ||||| || ||
Sbjct 878 GGACTGTTGAATCGAACAGAGCGGTTCGGTTTGTTGACTCGGATCACTTCTCTGTTCCAA 937
Query 821 AGGG-AAAGCGAGCTTTGGAGCTTCTATCGGGCAAAGAAGGCATAATTTCTCAAATGGTT 879
|||| ||| ||||| | ||||| || || ||||||||||| || ||||| |||||||||
Sbjct 938 AGGGCAAA-CGAGCCGTCGAGCTACTCTCAGGCAAAGAAGGAATTATTTCACAAATGGTT 996
Query 880 GAGAC-AAAGGC-GA-ACATTCCGTACA-AGCTGTCTTTCTCATTGGGACACGCAGGGGA 935
||||| |||| | || | | ||||||| | ||||||||||| | || |||||||| ||
Sbjct 997 GAGACCAAAG-CAGATA-AG-CCGTACATAT-TGTCTTTCTCACTAGGCCACGCAGGTGA 1052
Query 936 CAAGTGTAAGGAACCTTTGGCCGTAATGGCTTTTGCCGGAGATCAAGCACAGAACTTTCA 995
|| || |||||||| ||||| | ||||| || || || ||||| || |||||||||||
Sbjct 1053 TAAATGCAAGGAACCATTGGCTATTATGGCATTCGCAGGTGATCAGGCGCAGAACTTTCA 1112
Query 996 TTATATGGCGCAGGCGAACTCTAGTTTCGAAA-GATCGGAGTTGAACTTCACGGCGAAAG 1054
||| |||||||| |||||||| |||||||||| | ||| ||||| |||||||| || |
Sbjct 1113 TTACATGGCGCAAGCGAACTCCAGTTTCGAAAAGGCCGGT-TTGAATTTCACGGCTAAGG 1171
Query 1055 CTGAACGAACGAG-GATCGCCTTCTACAGCATTTATTACAATACGAGGACGGACGACATG 1113
|||| ||||| || | | || |||||||| ||||||||||||||||||| || || |||
Sbjct 1172 CTGATCGAACCAGAGTT-GCGTTCTACAGTGTTTATTACAATACGAGGACTGATGATATG 1230
Query 1114 AGTTCATTGTGTGGACCTGTGATTGATGACGTTA-AGGTTTGGTTCTCCGGGTCTA-GTA 1171
|| || ||||||||||||||||| |||||||||| || | |||||||||||||| | | |
Sbjct 1231 AGCTCCTTGTGTGGACCTGTGATCGATGACGTTAGAG-TGTGGTTCTCCGGGTCGAAG-A 1288
Query 1172 GAATTGGA 1179
|||| |||
Sbjct 1289 GAATCGGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5