BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934057

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34585.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   440    3e-123


> AT2G34585.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 
plant structures; EXPRESSED DURING: 15 growth stages; Has 43 
Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:14568047-14568637 
REVERSE LENGTH=591
Length=591

 Score =  440 bits (238),  Expect = 3e-123
 Identities = 270/286 (94%), Gaps = 0/286 (0%)
 Strand=Plus/Plus

Query  1    AGAAAGAGAGAAAGATCTCAATGGCGGCGATAACAAGCGCGGTGATAGCAATAGCCGGAA  60
            ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AGAGAGAAAGAGAGATCTCAATGGCGGCGATAACAAGCGCGGTGATAGCAATAGCCGGAA  205

Query  61   TTATATTGGGATGGATAACGATAGAGTTAGCTTGTAAGCCTTGCCTGGAAACAGGCCGTG  120
            | || ||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct  206  TAATCTTGGGATGGATAACGATAGAGTTAGCTTGTAAGCCTTGCCTGGAGTCGGGCCGTG  265

Query  121  AAGTCATCGACAGATCTCTCAATCCTGATTACGATCCCGATGACCAAGACGTCGACACAT  180
            ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct  266  AAGCCATCGACAGATCTCTCAATCCCGATTACGATCCTGATGACCAAGACGTCGACTCAT  325

Query  181  CTTCCGATGTTCGTGCTCCTCTCATCCCAAATCATCCTCCAGATAACTCCGATCCTGATC  240
            |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct  326  CTTCCGATGTTCGTGCTCCTCTCATCCCTAATCATCCTCCCGATAATTCCGATCCTGATC  385

Query  241  CCTCCACCGCGATCAAGTCCGTCTGATCGATCTTGAGTTTTGTTTG  286
            || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  386  CCACCACCGCGATCAAGTCCGTCTGATCGATCTTGAGTTTTGTTTG  431



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13170150238


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5