BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934063
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34630.2 | Symbols: GPPS, GPS1 | geranyl diphosphate synthas... 2109 0.0
> AT2G34630.2 | Symbols: GPPS, GPS1 | geranyl diphosphate synthase
1 | chr2:14578540-14581727 FORWARD LENGTH=1513
Length=1513
Score = 2109 bits (1142), Expect = 0.0
Identities = 1247/1299 (96%), Gaps = 2/1299 (0%)
Strand=Plus/Plus
Query 12 ATTTAGAAAATGTTATTCTCGAGGAGTGTTGCTCGTATTTCTTCTAAGTTTCTGAGAAAC 71
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 141 ATTTAGAAAATGTTATTCACGAGGAGTGTTGCTCGGATTTCTTCTAAGTTTCTGAGAAAC 200
Query 72 CGTAGCTTCTATGGCTGCTCTCAATCTCTCGCCTCTCACCGCTTCGCAATCATTCCCGAT 131
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 201 CGTAGCTTCTATGGCTCCTCTCAATCTCTCGCCTCTCATCGGTTCGCAATCATTCCCGAT 260
Query 132 CAGGGTCACTCTTGTTCTGACTC-CACACACAAGGGTTACGTTTGCAGAACAACATATTC 190
||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 261 CAGGGTCACTCTTGTTCTGACTCTC-CACACAAGGGTTACGTTTGCAGAACAACTTATTC 319
Query 191 ATTGAAATCTCCCCTTTTTGGTGGATTTAGTCATCAACTCTATCACCAGAGCAGCTCCTT 250
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 320 ATTGAAATCTCCGGTTTTTGGTGGATTTAGTCATCAACTCTATCACCAGAGTAGCTCCTT 379
Query 251 AGTTGAGGAGGAGCTTGACCCATTTTCGCTTGTTGCCGATGAGCTGTCACTTCTTAGTAA 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GGTTGAGGAGGAGCTTGACCCATTTTCGCTTGTTGCCGATGAGCTGTCACTTCTTAGTAA 439
Query 311 TAAGTTGAGAGAGATGGTAGTTGCCGAGGTTCCGAAGCTTGCCTCTGCAGCCGAGTACTT 370
||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||
Sbjct 440 TAAGTTGAGAGAGATGGTACTTGCCGAGGTTCCAAAGCTTGCCTCTGCTGCTGAGTACTT 499
Query 371 CTTCAAAAGGGGTGTGCAAGGAAAACAGTTTCGTTCAACTGTTTTGCTGTTGATGGCGAC 430
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 500 CTTCAAAAGGGGTGTGCAAGGAAAACAGTTTCGTTCAACTATTTTGCTGCTGATGGCGAC 559
Query 431 AGCTCTGAATTTACGCGTACCAGAAGCATTGATTGGCGAATCAACAGATATAGTCTCATC 490
|||||||||| |||| || ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 560 AGCTCTGAATGTACGAGTTCCAGAAGCATTGATTGGGGAATCAACAGATATAGTCACATC 619
Query 491 AGAGTTACGAGTAAGGCAACGGGGTATTGCTGAAATCACTGAAATGATACATGTTGCAAG 550
||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 620 AGAATTACGCGTAAGGCAACGGGGTATTGCTGAAATCACTGAAATGATACACGTCGCAAG 679
Query 551 TCTCCTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGGGGTGTTGGTTCCTTAAA 610
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 680 TCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAA 739
Query 611 TGTCGTAATGGGTAACAAGATGTCGGTATTAGCAGGAGACTTCTTGCTGTCCCGGGCTTG 670
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 740 TGTTGTAATGGGTAACAAGATGTCGGTATTAGCAGGAGACTTCTTGCTCTCCCGGGCTTG 799
Query 671 TGGGGCTCTCGCTGCCTTAAAGAACACAGAGGTTGTAGCATTACTTGCAACTGCTGTAGA 730
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TGGGGCTCTCGCTGCTTTAAAGAACACAGAGGTTGTAGCATTACTTGCAACTGCTGTAGA 859
Query 731 ACATCTTGTTACTGGTGAAACCATGGAAATAACTAGTACAACCGAGCAGCGTTATAGTAT 790
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 860 ACATCTTGTTACCGGTGAAACCATGGAGATAACTAGTTCAACCGAGCAGCGTTATAGTAT 919
Query 791 GGACTACTACATGCAAAAGACATATTATAAGACAGCATCACTAATTTCTAACAGCTGCAA 850
||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 920 GGACTACTACATGCAGAAGACATATTATAAGACAGCATCGCTAATCTCTAACAGCTGCAA 979
Query 851 AGCGGTTGCCGTTCTCACTGGACAAACAGCAGAAGTTGCCGTGTTAGCTTTTGAGTATGG 910
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AGCTGTTGCCGTTCTCACTGGACAAACAGCAGAAGTTGCCGTGTTAGCTTTTGAGTATGG 1039
Query 911 GAAGAATCTGGGTTTAGCATTCCAATTGATTGACGACATTCTTGATTTCACGGGCACATC 970
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1040 GAGGAATCTGGGTTTAGCATTCCAATTAATAGACGACATTCTTGATTTCACGGGCACATC 1099
Query 971 TGCCTCTCTCGGAAAGGGATCTTTATCAGATATCCGCCATGGAGTCATAACAGCTCCAAT 1030
||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 1100 TGCCTCTCTCGGAAAGGGATCGTTGTCAGATATTCGCCATGGAGTCATAACAGCCCCAAT 1159
Query 1031 CCTCTTTGCCATGGAAGAGTTTCCTCAACTACGCGAAGTTGTTGATCAAGTTGAAAAAGA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CCTCTTTGCCATGGAAGAGTTTCCTCAACTACGCGAAGTTGTTGATCAAGTTGAAAAAGA 1219
Query 1091 TCCAAGGAATGTTGACATTGCTTTAGAGTATCTTGGGAAGAGCAAGGGAATACAGAGGGC 1150
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TCCTAGGAATGTTGACATTGCTTTAGAGTATCTTGGGAAGAGCAAGGGAATACAGAGGGC 1279
Query 1151 AAGAGAATTAGCCATGGAACATGCTAATCTCGCAGCAGCTGCAATAGGGTCTCTACCTGA 1210
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1280 AAGAGAATTAGCCATGGAACATGCGAATCTAGCAGCAGCTGCAATCGGGTCTCTACCTGA 1339
Query 1211 AACAGACAATGAAGATGTCAAAAGATCGAGGCGGGCACTTATTGACTTGACCCATAGAGT 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AACAGACAATGAAGATGTCAAAAGATCGAGGCGGGCACTTATTGACTTGACCCATAGAGT 1399
Query 1271 CCTCACCAGAAACAAGTGAGATTAAGAAATGTTTCTCTC 1309
| |||||||||||||||||||||||| ||||||||||||
Sbjct 1400 CATCACCAGAAACAAGTGAGATTAAGTAATGTTTCTCTC 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5