BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934079
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34790.1 | Symbols: MEE23, EDA28 | FAD-binding Berberine fam... 2614 0.0
AT1G30760.1 | Symbols: | FAD-binding Berberine family protein ... 1175 0.0
> AT2G34790.1 | Symbols: MEE23, EDA28 | FAD-binding Berberine family
protein | chr2:14673840-14677270 REVERSE LENGTH=1790
Length=1790
Score = 2614 bits (1415), Expect = 0.0
Identities = 1561/1633 (96%), Gaps = 4/1633 (0%)
Strand=Plus/Plus
Query 1 CTCATTTACATCAAAAG-AAAATGGCGTTTGCGATATCAAAGCGAAACGCAACCGCGTTT 59
||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 13 CTCATCGACATAAAAAGAAAAATGGCGTTTGCGATATCAAAGCGAAACGCAACCTTGTTT 72
Query 60 CTTCTAACGCTACTACTAGTCTCCGTTCCATTGTCTTTCTCTACGCTACAACAAGATTTC 119
||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 73 CTTGTAACGCTACTACTAATCTCCGTTCCATTGTCTTCCTCCACGCTACAACAAGATTTC 132
Query 120 GTGAAGTGCCTTGTCGACAACTCAGACGTCTCGTTCCCTATAACGGCGTCGTTTTTCTCA 179
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 133 GTGAAGTGCCTTGTCGACAACTCCGACGTCTCCTTCCCCATAACGGCGTCGTTTTTCTCA 192
Query 180 CCGGACCAAAACGCTACTTTGTTTAAAGAAGAGCTTGAATCAACGGCACAGAATCTCCGT 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 193 CCGGACCAAAACGCTACTTTGTTTAAAGAGGAGCTTGAATCAACGGCACAGAATCTCCGT 252
Query 240 TACTTGACGCCGTCATACCCGAAGCCTGTATTCATATTCGAGCCTTTGTACGAGACGCAT 299
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 253 TACTTGACGCCGTCAAACCCGAAGCCCGTGTTCATATTCGAGCCTTTGTACGAGACGCAT 312
Query 300 GTCCAAGCAGCGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGCGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GTCCAAGCAGCGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGCGGT 372
Query 360 GGTCACGACTACGAAGGGCTCTCGTTCGTCGCCGAGGACGAGACGCCGTTTGTGATCGTT 419
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 373 GGTCACGACTACGAAGGGCTCTCGTTTGTTGCCGAGGACGAAACGCCGTTTGTGATCGTT 432
Query 420 GATTTGTCAAAGCTTAGACAGGTCGACGTTGATTTGGACAGTAACAGTGCGTGGGCTCAT 479
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 433 GATTTGTCGAAGCTTAGACAGGTTGACGTTGATTTGGACAGTAACAGTGCGTGGGCTCAT 492
Query 480 GCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACCCATGGT 552
Query 540 TTCCCGGCTGGTTTATGCTCGAGCCTTGGCATCGGCGGCCACTTAGTCGGCGGAGCGTAC 599
|| ||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 553 TTTCCGGCCGGTTTATGCTCAAGCCTTGGCATCGGTGGCCACTTAGTCGGTGGAGCGTAC 612
Query 600 GGTTCCATGATGCGTAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATTGTC 659
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 613 GGTTCCATGATGAGGAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGAATCGTC 672
Query 660 GACGCCAACGGCCAGATCCTTGATCGCGCGGCGATGGGAGAAGACGTTTTCTGGGCGATT 719
|||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 673 GACGCCAACGGCCAAATCCTCGATCGCGCGGCAATGGGAGAAGACGTCTTCTGGGCGATT 732
Query 720 CGCGGTGGTGGCGGTGGTAGCTTCGGCGTGATACTCGCCTGGAAGATCAAGCTCGTCCCC 779
||||| || |||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 733 CGCGGCGGCGGCGGTGGTAGCTTCGGCGTGATATTGGCCTGGAAGATTAAGCTCGTCCCC 792
Query 780 GTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGGAACTAAA 852
Query 840 GTTTTATACAAATGGCAACAAGTCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTC 899
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTTTTATACAAATGGGAACAAATCGCTGATAAGCTTGACGATGATCTCTTCATTCGCGTC 912
Query 900 ATTATTTCGCCGGCGAGTAAAACTACCAAACCGGGAAATCGAACCATCTCTATGTCGTAC 959
|||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 913 ATTATTTCACCGGCCAGTAAAACCACCAAACCGGGAAATCGAACCATCTCGATGTCGTAC 972
Query 960 CAAGCTCAGTTTCTCGGCGACTCGAATCGGCTCTTGCAGGTGATGCAGAAGAGTTTCCCT 1019
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 973 CAAGCTCAGTTTCTCGGAGACTCCAATCGGCTCTTGCAGGTGATGCAGAAGAGTTTCCCT 1032
Query 1020 GAGCTAGGACTGACGAAGAAGGACTGCACAGAGATGAGCTGGATCAAAGCAGTGATGTAC 1079
||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1033 GAGTTAGGACTGACGAAGAAGGACTGCACAGAAATGAGCTGGATCAAATCAGTGATGTAC 1092
Query 1080 ATTGCAGGATTTCCAAACAGTGCACCACCAGAAGCTTTACTAGCTGGAAAATCATTGTTC 1139
|||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1093 ATTGCAGGTTTTCCAAACAGTGCAGCACCGGAAGCTTTACTAGCCGGAAAATCATTGTTC 1152
Query 1140 AAGAATCACTTCAAGGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTTTA 1199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AAGAATCACTTCAAAGCCAAGTCAGACTTTGTGAAAGAGCCAATTCCAGTAGAAGGTTTA 1212
Query 1200 GAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCGCCGCTAACGATATGGAACCCTTAC 1259
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1213 GAAGGATTATGGGAAAGGTTTCTAGAAGAAGATTCACCGTTAACGATATGGAACCCTTAC 1272
Query 1260 GGAGGAATGATGTCGAGGATCTCCGAGTCAGAGATACCTTTCCCTCATAGAAACGGGACG 1319
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1273 GGAGGAATGATGTCGAGGATCTCCGAGTCAGAGATACCTTTCCCTCATAGGAACGGGACA 1332
Query 1320 TTGTTCAAGATTCAGTGGCTAAGCACGTGGCAAGATGGGAAAGTGAGTGAG-ACAAGGCA 1378
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1333 TTGTTCAAGATTCAGTGGCTAAGCACGTGGCAAGATGGGAAAGTGAGCGAGGA-AAGGCA 1391
Query 1379 TATGAAGTGGATTAGGGAAATGTATAGTTACATGGAGCAATACGTGTCGAAGAACCCGAG 1438
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1392 TATGAAGTGGATTAGGGAGATGTATAGTTACATGGAGCAGTATGTGTCGAAGAACCCGAG 1451
Query 1439 ACAGGCCTATGTGAATTACAGGGATCTTGATTTGGGGACGAATGAAGGAGAGAGTGATGC 1498
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1452 ACAGGCGTATGTGAATTACAGGGATCTTGATTTGGGGACTAATGAAGGAGAGACTGATGC 1511
Query 1499 TAGAGAGTGGGGTGCTAAGTATTACAAAGGGAATTTCGAGAGGTTGGTGAAGATTAAGGG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TAGAGAGTGGGGTGCTAAGTATTACAAAGGGAATTTCGAGAGGTTGGTGAAGATTAAGGG 1571
Query 1559 TGAGTTTGATCCTGACAATTTCTTCAGGCATGAACAAAGTGTTCCCACAAAGATTGGTTG 1618
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1572 TGAGTTTGATCCTGATAATTTCTTCAGGCATGAACAGAGTGTTCCGACAAAGATTGGTTG 1631
Query 1619 ATGGATT-GGAGT 1630
||||||| |||||
Sbjct 1632 ATGGATTTGGAGT 1644
> AT1G30760.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10918278-10920677 FORWARD LENGTH=1884
Length=1884
Score = 1175 bits (636), Expect = 0.0
Identities = 1314/1633 (80%), Gaps = 80/1633 (5%)
Strand=Plus/Plus
Query 18 AAAATGGCGTTTGCGATATCAAAGCGA-AACGCAACCGCGTTTCTTCTAACGCTAC---T 73
|||||||||||| | ||| || | | ||| ||| |||||||||| ||||||||| |
Sbjct 41 AAAATGGCGTTT--G-TATTAATG-AATAACACAAACGCGTTTCTTGTAACGCTACTATT 96
Query 74 ACTAGT--C--TC---CGTTCCATTGTCTTTCTCTACGCTACAACAAGATTTCGTGAAGT 126
|||| | | || | ||||||||||||| || || | |||||||| ||||||| ||
Sbjct 97 ACTA-TCCCTTTCTTACATTCCATTGTCTTTTTCCACAATCCAACAAGACTTCGTGATGT 155
Query 127 GCCTTGTCGACAACTCAGACGTC-TCGTTCCCTAT-AACGGCGTCGTT-TT-TCTCACCG 182
| || ||||||||||| |||| | || || || || || | ||||| || |||| |
Sbjct 156 GTCTAGTCGACAACTCCGACG-CTTCCTTTCCAATGGAC-TCATCGTTCTTCACTCA-C- 211
Query 183 GACCAAAACG-CTACTTTGTTTAAAGAAGAGCTT-GA-ATCAACGGCACAGAATCTCCGT 239
|||| ||||| || ||| |||||| | ||| || | | | || || |||||||||
Sbjct 212 GACCTAAACGCCT-CTTCCTTTAAACTCG-CCTTAGAGA-CGTCAGCTCAAAATCTCCGT 268
Query 240 TACTTGACGCCGTCATACCCGAAGCCTGTA-TTCATATTCGAGCC-TTTGTACGAGACGC 297
||||||| ||| ||| | || ||||| | | ||||| |||||||| || ||||| ||||
Sbjct 269 TACTTGATGCCTTCAAATCCTAAGCCAG-AGTTCATTTTCGAGCCGCTT-TACGAAACGC 326
Query 298 ATGTCCAAGCAG-CGGTCGTGTGTGCCAAGAAGCTTCAGCTTCACCTCCGGCTACGTAGC 356
| || || || | || || | || ||||||||||| |||||||| | ||| || | |||
Sbjct 327 ACGTTCAGGCCGCCGTTC-TTTGCGCCAAGAAGCTGAAGCTTCACTTGCGGTTAAGAAGC 385
Query 357 GGTGGTCACGACTACGAAGGGCTCTCGTT-CGTCGCCGAGGA-CGAGACGCCGTTTGTGA 414
|||||||| ||||||||||| ||||| || |||| | || || || ||| |||||||||
Sbjct 386 GGTGGTCATGACTACGAAGGCCTCTC-TTACGTCTCGGA-GATGGAAACGGCGTTTGTGA 443
Query 415 TCGTTGATTTGTCAAAGCTTAGACAGGTCGA-CGTTGATTTGGACAGTAACAGTGCGTGG 473
|||| || ||||| |||||||||||| || | |||||| | || |||||||| ||||||
Sbjct 444 TCGTCGACTTGTCCAAGCTTAGACAGATC-AGTGTTGATATAGAAAGTAACAGCGCGTGG 502
Query 474 GCTCATGCTGGTGCTACCATCGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCCAAACC 533
| ||| ||||||||| | || ||||||||||||||||||||||||||||||||| ||| |
Sbjct 503 GTTCACGCTGGTGCTTCTATTGGAGAGGTTTATTACAGGATCCAAGAGAAAAGCAAAATC 562
Query 534 CATGGTTTCCCGGCTGGTTTATGCTCGAGCCTTGGCATCGGCGGCCACTTAGTCGGCGGA 593
|| ||||| ||||| ||||||||| | ||||| ||||||||||| ||| || ||||||||
Sbjct 563 CACGGTTTTCCGGCGGGTTTATGCACCAGCCTAGGCATCGGCGGTCACATAATCGGCGGA 622
Query 594 GCGTACGGTTCCATGATGCGTAAGTTCGGTCTCGGCGCTGACAATGTCCTCGACGCCAGA 653
|| || ||||| |||||||||||||| |||||||| ||||| || |||||||| || ||
Sbjct 623 GCCTATGGTTCAATGATGCGTAAGTTTGGTCTCGGAGCTGATAACGTCCTCGATGCTAGG 682
Query 654 ATTGTCGACGCCAACGGCCAGATCCTTG-ATCGCGCGGCGATGGGAGAAGACGTTTTCTG 712
|| || ||||| ||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 683 ATCGTTGACGCTGACGGCAAAAT-CTTGAATCGCGCGGCGATGGGAGAAGACGTTTTCTG 741
Query 713 GGCGATTCGCGGTGGTGGCGGTGGTAGCTTCGGCGTGATACTCGCCTGGAAGATCAAGCT 772
||||||||| || ||||| || || ||||||||||| ||||| |||||||| || |||||
Sbjct 742 GGCGATTCGAGGAGGTGGAGGAGGAAGCTTCGGCGTAATACTTGCCTGGAAAATAAAGCT 801
Query 773 CGTCCCCGTTCCGGCGACCGTTACGGTATTCACAGTCACGAAGACGCTTGAGCAAGACGG 832
||| || || || | || |||||||| || || ||||||| ||||||||||||||||||
Sbjct 802 CGTTCCGGTGCCAGAGATTGTTACGGTGTTTACCGTCACGAGGACGCTTGAGCAAGACGG 861
Query 833 AACTAAAG-TTTTATACAAATGGCAACAAGTCGCTGATAAGCTTGACGATGATCTCTTCA 891
|||||| | |||| ||||| ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 862 AACTAA-GCTTTTGTACAAGTGGCAACAAGTCGCTGATAAGCTCGACGAAGATCTCTTTA 920
Query 892 TTCGCGTCATTATTTC-GCCGGCGAGTAAAACTACC-AA-ACCGG-GAAATCGAACCATC 947
| || || |||||| | |||| |||| |||||| || || | | |||| |||| |||
Sbjct 921 TCCGTGTGATTATT-CAGCCGACGAGCAAAACT-CCGAAGAGCAAAGAAA--GAACTATC 976
Query 948 TCTA-TGTCGTACCAAG-CTCAGTTTCTCGGCGACTCGAATCGGCTCTTGCAGGTGATGC 1005
|| | | |||||||||| | || |||||||||||| | ||||| | |||||||||||||
Sbjct 977 TCGACT-TCGTACCAAGGC-CAATTTCTCGGCGACGCTAATCGTTTGTTGCAGGTGATGC 1034
Query 1006 AGAAG-AGTTTCCCTGAGCTAGGACTGACGAAGAAGGACTGCACAGAGATGAGCTGGATC 1064
| ||| |||||||| |||| ||||| |||||||| || || ||||| |||||||||
Sbjct 1035 A-AAGGAGTTTCCCACAGCTTGGACTAACGAAGAAAGATTGTTTAGAGACAAGCTGGATC 1093
Query 1065 AAAGCAGTGATGTACATTGCAGGATTTCCAAACAGTGCACCACCAGAAGCTTTACTAGCT 1124
||| | ||||||||||||||||| ||||||| || ||| ||| ||||||||||||| | |
Sbjct 1094 AAATCGGTGATGTACATTGCAGGTTTTCCAAGCACTGCCCCATCAGAAGCTTTACTCGAT 1153
Query 1125 GGAAAATCATTGTTCAAGAATCACTTCAAGGCCAAGTCAGACTTTGTGAAAGAGCCAATT 1184
|| ||||| |||||||||||| ||||||| ||||||||||||| |||| |||||||||||
Sbjct 1154 GGGAAATCGTTGTTCAAGAATTACTTCAAAGCCAAGTCAGACTATGTGGAAGAGCCAATT 1213
Query 1185 CCAGTAGAAGGTTTAGAAGGATTATGGGA-AAGGTTTCTAGAAGAAGATTCGCCGCTAAC 1243
|||||||| || |||||||| || ||||| ||| || |||||||| || || || | ||
Sbjct 1214 CCAGTAGAGGGATTAGAAGGGTTGTGGGAGAAGCTT-CTAGAAGAGGACTCACCATTGAC 1272
Query 1244 GATATGGAACCCTTACGGAGGAATGATGTCGAGGATCTCC-GAGTCAGAGATACCTTTCC 1302
|||||||| ||||| |||||||||||| | | || ||| ||| |||||| ||||||||
Sbjct 1273 TATATGGAATCCTTATGGAGGAATGATGGCAAAAAT-TCCCGAGACAGAGACACCTTTCC 1331
Query 1303 CTCATAGAAACGGGACGTTGTTCAAGATTCAGTGGCTAAGCAC-GTGGCAAGATGGGAAA 1361
| ||||| | ||||| ||||||||||| || ||||| | | ||||||||||||||||
Sbjct 1332 CACATAGGAGTGGGACATTGTTCAAGATACAATGGCTGA-CTTTGTGGCAAGATGGGAAA 1390
Query 1362 GTGAGTGAGAC-AAGGCATATGAAGTGGATTAGGGAAATGTATAGTTACATGGAGCAATA 1420
|| ||| | ||| |||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 1391 ACAAGCGAGGCGAAG-CATATGGGGTGGATGAGGGAAATGTATAGTTACATGGAGCAGTA 1449
Query 1421 CGTGTCGAAGAA-CCCGAGA-CAGGCCTATGTGAATTACAGGGATCTTGATTTGGGGACG 1478
|| ||||| || ||||||| | | | || ||||| || || |||||||||||||||| |
Sbjct 1450 TGTATCGAA-AAGCCCGAGATCCG-CGTACGTGAACTATAGAGATCTTGATTTGGGGATG 1507
Query 1479 AATG--AAGGAGAGAGTGATGCTAGAGAGTGGGGTGC-TAAGTATTACAAAGGG-AATTT 1534
|||| || | | ||||||||| ||||| ||||| | || ||||| ||| ||| |||||
Sbjct 1508 AATGGTAAAG-G-GAGTGATGCAAGAGAATGGGG-GAATAGGTATTTCAA-GGGTAATTT 1563
Query 1535 CGAGAGGTTGGTGAAGATTAAGGGTGAGTTTGATCCTGACAATTTCTTCAGGCATGAACA 1594
|| ||||||||| ||||||| | | ||||||||||||| |||||||| || ||||||||
Sbjct 1564 TGAAAGGTTGGTGGAGATTAAAGCTAAGTTTGATCCTGAGAATTTCTTTAGACATGAACA 1623
Query 1595 AAGTGTTCCCACA 1607
|||| |||| |||
Sbjct 1624 AAGTATTCCTACA 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5