BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934083

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34825.1 | Symbols: RALFL20 | RALF-like 20 | chr2:14691411-1...   322    1e-87
  AT2G32885.1 | Symbols:  | Rapid alkalinization factor (RALF) fa...   267    5e-71


> AT2G34825.1 | Symbols: RALFL20 | RALF-like 20 | chr2:14691411-14691629 
FORWARD LENGTH=219
Length=219

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 201/214 (94%), Gaps = 2/214 (1%)
 Strand=Plus/Plus

Query  21   ATGGTTATATCCaaaaaaaCAATTATGCAATCATTCGCTCTTATAATTATTATATCTATC  80
            |||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  1    ATGGTTCTATCCAAGAAAACAATTATGCAATCATTCGCTCTTATGATTATTCTATCTATC  60

Query  81   GTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGAACCT  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGAACCT  120

Query  141  AATGGTTGTGCC-CCTGGGTCCCCATCAGGTTGCAAAATGCAACCGGCTAATCCATATAA  199
            || |||||| || ||||| |||||| || |||| ||||||||||||||||||||||||||
Sbjct  121  AAAGGTTGT-CCTCCTGGATCCCCAGCAAGTTGTAAAATGCAACCGGCTAATCCATATAA  179

Query  200  ACCAGGTTGCGAAGCTAGTCAAAGATGCCGTGGT  233
            ||||||||| ||||||||||||||||| ||||||
Sbjct  180  ACCAGGTTGTGAAGCTAGTCAAAGATGTCGTGGT  213


> AT2G32885.1 | Symbols:  | Rapid alkalinization factor (RALF) 
family protein | chr2:13951686-13953478 FORWARD LENGTH=1793
Length=1793

 Score =  267 bits (144),  Expect = 5e-71
 Identities = 202/231 (87%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  17   AAAAATGGTTATATCCaaaaaaaCAATTATGCAATCATTCGCTCTTATAATTATTATATC  76
            |||||||| ||||||||| |||||| || | |||||||| ||||||||||||||||||||
Sbjct  573  AAAAATGGGTATATCCAAGAAAACAGTTGTACAATCATTTGCTCTTATAATTATTATATC  632

Query  77   TATCGTCATGAGCACAACAGAAGCAAAAACCATAGGCAATCCAGCTATGCGAGAAGATGA  136
            |||||||||||||||||| || ||||| |  ||||||  |||||||||||||||||||  
Sbjct  633  TATCGTCATGAGCACAACGGAGGCAAACAGTATAGGCGCTCCAGCTATGCGAGAAGATTT  692

Query  137  ACCTAATGGTTGTGCCCCTGGGTCCCCATCAGGTTGCAAAATGCAACCGGCTAATCCATA  196
            ||| || |||||||| ||||| ||  || | |||||||| ||||||||||||||||| ||
Sbjct  693  ACCCAAAGGTTGTGCTCCTGGATCTTCAGCTGGTTGCAAGATGCAACCGGCTAATCCGTA  752

Query  197  TAAACCAGGTTGCGAAGCTAGTCAAAGATGCCGTGGTGGTTGATAGTATGA  247
            ||||||||||||||||||||| |||||||| ||||| |||||||| |||||
Sbjct  753  TAAACCAGGTTGCGAAGCTAGCCAAAGATGTCGTGGGGGTTGATACTATGA  803



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11812921015


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5