BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934084

Length=368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05540.1 | Symbols:  | Methionine sulfoxide reductase (MSS4-...   193    1e-48
  AT2G36200.2 | Symbols:  | P-loop containing nucleoside triphosp...  65.8    3e-10


> AT3G05540.1 | Symbols:  | Methionine sulfoxide reductase (MSS4-like) 
family protein | chr3:1606487-1608030 REVERSE LENGTH=507
Length=507

 Score =  193 bits (104),  Expect = 1e-48
 Identities = 119/126 (94%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  225  CAATT-TT-GTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTGGCTTACTAC  282
            ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  382  CAATTCTTCGTGGGAGAGAGCATGGAAGGAGAAGAAGGGAGCTTAGTGTTTGCTTACTAC  441

Query  283  AGAGAAGCTGCCACTAATCCTACTTTTCTCTACTTAGCCTACGGCTTGAAAGAGATCAAG  342
            |||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  442  AGAGAAGGAGCCACTGATCCTACTTTTCTCTACTTGGCCTACGGCTTGAAAGAGATCAAG  501

Query  343  TGCTGA  348
            ||||||
Sbjct  502  TGCTGA  507


> AT2G36200.2 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr2:15179869-15185314 
REVERSE LENGTH=3457
Length=3457

 Score = 65.8 bits (35),  Expect = 3e-10
 Identities = 42/45 (93%), Gaps = 2/45 (4%)
 Strand=Plus/Plus

Query  6    GACAAAGAGAAAGGCGTCAATGTTCAAGTC-TACCTTCGATGCAG  49
            |||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct  141  GACAAAGAGAAAGGCGTCAATGTTCAAGTCCT-CCTCCGATGCAG  184



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17292105656


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5