BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934100
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1434 0.0
> AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast
hits to 43 proteins in 9 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:14726800-14728128
FORWARD LENGTH=1329
Length=1329
Score = 1434 bits (776), Expect = 0.0
Identities = 868/913 (95%), Gaps = 3/913 (0%)
Strand=Plus/Plus
Query 4 TCTTAAGATTTCTGAGTTTGTTATGTCTCCTCCAGCATTGATTGTGTTTGAAGATGGTTT 63
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 79 TCTTAAGATTTCTGACTTTGTTATGTCTCCTCCAGCATTGGTTGTGTTTGAAGATGGTTT 138
Query 64 AATCCAGAAATGGAGCAACGACGATTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 123
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 AACCCAAAAATGGAGCAACGACGAGTGGCAGGGTTTCAGCGTTTATCCCGGAGAAAACCC 198
Query 124 TAACCCTAATATTAATTTCTTGGTGAAGAAGGCGGCTCTGCAGAACCAGATGACCGTCTC 183
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 199 TAACCCTAATATTAATTTCTTGGTGCAGAAGGCGACTCTGCAGAACCAGATGACTGTCTC 258
Query 184 TCGCCCATCAG-TGAACGACGAAAGCTTCAGAATGGTCTTACCTCTTGCGATGTCTCCGC 242
||||||||| | ||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct 259 TCGCCCATC-GCTGAACGAAGAGAGCTTCAGAATGGTCTTACCTCTGGCAATGTCTCCGC 317
Query 243 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCCGAGCCGATGATGAGACCACGGAAGA 302
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 318 CAAGAGACAACGCTGTGCCTCTTCCTGTTCTTCCTGAGCCGATGATGAAACCACGGAAGA 377
Query 303 AGCTTAGCCACCAAGAATCAATGCTTTCTATACGAAAATATAGGTATCCCGAGAAAAACT 362
||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||
Sbjct 378 AGCTTAGCCACCAAGAATCCATGCTTTCTCTACGAAAATCTCGGTATCCCGAGAAAAACT 437
Query 363 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCCTTCTGTTTATCCTTCCCTGGGTTTG 422
|||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||
Sbjct 438 TCTACCAAGAAGAAGAAAATTTCAAGTGCAATGCGTTCTGTTTATCCCTCCCCGGGTTTG 497
Query 423 GaaaaaaaCTTGTGAGATCACCAAAAAGCGAGGATTCTATAAAGAAGAAAATGATCAAAG 482
|||||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 498 GAAAAAGACCTGTGCGATCACCAAAAAGCGAGGACTCTATAAAGAAGAAAATGATCAAAG 557
Query 483 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTCGAGAAATTCGAATGTG 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 558 CGTCATCATTCTCAAATTCCACTGTCTCACTAAGTGCCTCGCTAGAGAAATTCGAATGTG 617
Query 543 GCTCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATTTCGATCTGC 602
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 618 GATCATGGGCTTCAACGACAGCTCTAACCCGCGAAAACGGCAGATTGTATATCGATCTAC 677
Query 603 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CGGTGGAGATGATCAAATGTGGCGGTGGAGATGTGCAAGAACCAGTGAGTTCTGGTTTCT 737
Query 663 TCTTTGACAAAGAAACGGGAAATCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 722
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCTTTGACAAGGAAACAGGAAGTCTAGCTTTGAGAAGCGTTCTAAAGAAAAGCAGTTCTC 797
Query 723 TGTCGGGAAGACAACTAAGGGATTCAGCGGAGACATCCCCGCAACGCCGTGTCAGATTCT 782
|||| ||||||||| ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 798 TGTCTGGAAGACAATTAAGGGATTTGGCTGAGACATCCCCGCAACGCCGTGTCAGATTCT 857
Query 783 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCACGAACATGTATTACCCCAAGACTGT 842
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 858 CGACCACAACCTCGGATTCGTGCCCAGCTTCGCCGCGAACATGTATTACCCCAAGACTGT 917
Query 843 TGAAAGCTAGAGATGATTTCAATACCTTCTTAGCAGCACAGAACGCGTGAAACACACAAA 902
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 918 TGAAAGCTAGAGATGACTTCAATACGTTCTTAGCAGCACAGAACGCGTGAAACACACACA 977
Query 903 ACAACaaaaaaaa 915
| || ||||||||
Sbjct 978 A-AATAAAAAAAA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5