BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934108
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35000.1 | Symbols: | RING/U-box superfamily protein | chr2... 1659 0.0
AT2G34990.1 | Symbols: | RING/U-box superfamily protein | chr2... 1160 0.0
> AT2G35000.1 | Symbols: | RING/U-box superfamily protein | chr2:14751574-14753319
REVERSE LENGTH=1746
Length=1746
Score = 1659 bits (898), Expect = 0.0
Identities = 1077/1162 (93%), Gaps = 18/1162 (2%)
Strand=Plus/Plus
Query 2 CTTT-CATACGATGATCTTCATATGGCGATCATCGACACAAACTCCAGCCGTTGGATCCC 60
|||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 353 CTTTCCATACGATGATCTTCAAATGGCGATCCTCGACACAAAGTCCAGCCGTTGGATCCC 412
Query 61 TCACAACCTTCTCTTCCTTCTCCTCTTGCTATTGCTCCAGTCAGTACCGTATGGA-TC-- 117
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 413 ACACAACCTTCTCTTTCTTCTCCTCTTGCTCTTGCTCCAGTCAGTACCGTATGGATTCGG 472
Query 118 -C-G-GTCAGACCACACCGCCCGGAACTACACAAACGAAAGCC-AACGATCCAATTGTTG 173
| | |||||||||||| |||||||| ||| |||||||| || ||||||||| ||||||
Sbjct 473 TCAGACTCAGACCACACCACCCGGAACAACAAAAACGAAA-CCTAACGATCCAGTTGTTG 531
Query 174 TAGTGATAACGGTTATGTTTGTGGTGATCTTCTTCATGGTCTTCGGTTCCATCTTCTGTC 233
| || || |||||| ||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 532 TTGTAATCACGGTTTTGTTTTTAGTGATCTTTTTCATGGTCTTCGGTTCCATCTTCTGTC 591
Query 234 GTCGAAGCAACGCGCGGTTTTACTCACGTTCTTCTGTTTTCCGATCCACCGACGCAGACG 293
||||||||||||| | | ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 592 GTCGAAGCAACGCACAG-TTT--TCACGTTCTTCCATTTTCCGATCCACCGACGCAGACG 648
Query 294 CGGAGTC-CCGCGTGGTGAGGATCAGAAGGTCGACGGCGCGTGGGCTCGAGGCGGAGGCT 352
| ||||| | | || || |||||||| |||| |||||||||||||||||| |||||||||
Sbjct 649 CCGAGTCTCAG-GTCGTCAGGATCAGGAGGTTGACGGCGCGTGGGCTCGACGCGGAGGCT 707
Query 353 ATAGAATCTTTCCCGACGTTTCTTTACTCGGAGGTGAAGGCGGTGAGGATCGGTAAAGGT 412
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 708 ATAGAAACTTTCCCGACGTTTCTTTACTCGGAGGTGAAGGCGGTGAGGATCGGGAAAGGT 767
Query 413 GGTGTGGAGTGTGCGGTTTGTCTCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGTGTGGAGTGTGCGGTTTGTCTCTGTGAATTCGAAGACGACGAAACGCTGCGTTTGATG 827
Query 473 CCTCCTTGTTGCCACGTGTTTCACGTCGATTGCGTTGACGTCTGGCTCTCAGAACACTCC 532
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 828 CCTCCTTGTTGCCACGTGTTTCACGCCGATTGTGTTGACGTCTGGCTCTCAGAACACTCC 887
Query 533 ACGTGTCCTCTCTGTAGAGCGGATCTTGTCCTCAGCCAACATGGTGACGACGACGACAGT 592
|||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 888 ACGTGTCCTCTCTGTAGAGCGGATCTTGTCCTAAACCAACAAGGTGACGACGACGACAGC 947
Query 593 ACTGAAAGCTACTCGGGTACAGATCCGGGTACGATTTCGTCGGGTACGGATCCTGAGAGA 652
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 948 ACTGAAAGCTACTCGGGTACGGATCCAGGTACGATTTCGTCGAGTACGGATCCTGAGAGA 1007
Query 653 GGAATGGTTTTGGAATCTTCGGACGCGCATTTGCTGGATGGAGTGACGTGGACCAATAGT 712
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1008 GGAATGGTTTTGGAATCTTCGGACGCGCATTTGCTGGATGCTGTGACGTGGAGCAATAGT 1067
Query 713 AACATAACGCCTCGGTCAAAGTCAACGGGATTATCCAGCTGGCGTATAACCGGAATTTTG 772
|||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1068 AACATAACACCTCGGTCAAAGTCAACGGGGTTATCCAGCTGGCAAATAACCGGAATTTTG 1127
Query 773 TTCCCGAGATCTCATTCGACCGGACATTCGTTGGTTCAACCGGCTGGAAATCTAGACCGG 832
||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1128 TTCCCGAGATCGCACTCGACCGGACATTCGTTAATTCAACCGGCTGGGAATCTAGACCGG 1187
Query 833 TTTACGTTGACCTTACCTGATGATGTACGACGGCAA-TTGATGAAGACATCGAGGACGAT 891
|||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct 1188 TTTACGTTGAGGTTACCGGATGATGTACGACGGCAACTT-ATGAAGACATCGAGGACGAT 1246
Query 892 GGGACACGTGGCGTTATTACCTCAGGCGAGGAGTTCACGGAGCGGTTACAGAAGCGGTAG 951
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1247 GGGACACGTGGCGTTACTACCTCAGGCGAGGAGTTCACGGAGCGGTTATAGAAGCGGTAG 1306
Query 952 CGTCGGGAGCGAGAGAAGCGTTTTTACGTACGGACGGAAGAGTAATAATAACAATCGACG 1011
|||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 1307 CGTCGGGAGCGAGAGAAGCGCTTTCCCGTACGGACGTAAGAGTAATAATAACAATCGACG 1366
Query 1012 GCTGCATTCGCTGTCTTTTTCATTCTCTTTCCGGAGTGGTTCTGTGCGGTCTACTTTCTC 1071
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1367 GCTTCATTCGCTGTCTTTTTCATTCTCTTTCCGGAGTGGTTCCGTACGGTCTACTTTCTC 1426
Query 1072 CGGAGATGCGCCAAAGAATCTTCCGACATCTG-TCGAAGCTGGTGAACGGTCTTTCGAAC 1130
|||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1427 CGGAGATGCGCCGAAGAATCTTCCGACATC-GATTGAAGCTGGTGAACGGTCTTTCGAAC 1485
Query 1131 GGCTCCGACCAGATGATCGAGT 1152
|||||||||||||||| |||||
Sbjct 1486 GGCTCCGACCAGATGAACGAGT 1507
> AT2G34990.1 | Symbols: | RING/U-box superfamily protein | chr2:14750260-14751168
REVERSE LENGTH=909
Length=909
Score = 1160 bits (628), Expect = 0.0
Identities = 807/889 (91%), Gaps = 29/889 (3%)
Strand=Plus/Plus
Query 1160 ATGGCGCAGCCTGGAACCGAGACAAAAGCAAGCGACCTAGCCATCCTAGTAATCACTCTT 1219
|||| ||||||||||||||||| |||||||||||||||| || | ||||||||||| ||
Sbjct 1 ATGGTGCAGCCTGGAACCGAGATAAAAGCAAGCGACCTAACCCTACTAGTAATCACGATT 60
Query 1220 ATACTCTTCGCGATCTTCGTCGTTGGTTTGGCTTCGGTTTGCTTTCGCTGGACCTCTCGC 1279
||||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 ATACTCTTCGCAATCTTCATCGTTGGCTTGGCTTCGGTTTGCTTCCGCTGGACCTCTCGC 120
Query 1280 CAGTTTTACTCGCAAGAATCCACCAACCCGTTCACTGACTCCGACGTTGAATCCCGTACG 1339
|| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAATTTTACTCACAAGAATCCATCAACCCTTTCACTGACTCCGACGTTGAATCCCGTACG 180
Query 1340 AGTATTACGGCGGCGCGTGGGCTGGACGAGGCTATCATCAACTCATTCCCGACGTTTCTC 1399
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 181 AGTATTACGGCGGTGCGTGGGCTCGACGAGGCTATCATCAACTCATTTCCGACGTTTCTC 240
Query 1400 TACTCGGAGGTGAAGGAGCGTAGGATCGGGATAGGTGGAGTCGAGTGTGCGGTGTGTATC 1459
|||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct 241 TACTCGGAGGTGAAGGAGCGGAGAATCGGGATAGGTGGCGTCGAGTGTGCAGTGTGTATC 300
Query 1460 TGTGAGTTCGAAGACCATGAAACGCTGCGTTTGATGCCTGAGTGTTGCCACGTGTTTCAC 1519
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 301 TGTGAGTTCGAAGACCATGAAACGCTCCGTTTGATGCCTGAATGCTGCCACGTGTTTCAT 360
Query 1520 GTTGATTGTGTAAGTGTCTGGCTCTCTGATCACTCCACGTGTCCGCTCTGTCGTGTGGAT 1579
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCTGATTGTGTAAGTGTCTGGCTCTCTGATCACTCCACGTGTCCACTCTGTCGTGTGGAT 420
Query 1580 CTTTTCTTACAACCGGGTGAGAGGAGCTACTTGAATCCGGATCCGGATCCTGTAGAATCT 1639
|||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 421 CTTTGCTTACAACCGGGTGAGAGAAGCTACTTGAATCCGGAACCGGATCTTGTAGAATCT 480
Query 1640 ACAAACTCGCATCTGTTTGATGGTGTGACGTGGACCAATAGGAACAGACCGTCTCGGTCA 1699
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAAACTCGCATTTGTTTGATGGTGTGACGTGGACCAATAGGAACAGACCGTCTCGGTCA 540
Query 1700 TGGTCAACGAGATTGTCTCAATGTCGAGTCTCCCAGATATTAATCTCAAGATCGCACTCG 1759
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 541 TGGTCAACGAGATTGTCTCAATGTCGAGTCTCCCAGATATTAATCTCGAGATCGCATTCG 600
Query 1760 ACCGGGCATTCTGTGGTTCAACCTTTAGATAATTTAGACCGGTTTACGCTTCGGTTACCA 1819
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 ACCGGACATTCTGTGGTTCAACCGCTAGATAATTTAGACCGGTTTACGCTTCGGTTACCA 660
Query 1820 GAAGAAGTCCAGAGGCAACTGAC-AAAGAAGACGGTGGACCATGCGGCATTACCTCATGC 1878
|||||||||| |||||||||||| ||| || ||||||||| | | |||||| |||| ||
Sbjct 661 GAAGAAGTCCGGAGGCAACTGACGAAAAAA-ACGGTGGACAACGTGGCATTTTCTCAGGC 719
Query 1879 AAGGAGCTCGCGGCGCGGTTACAGAAGCAGAAGTGCCGGAAGCAGAAGCGATTGGAGTGT 1938
|||||||| ||||| ||||||||||||||||||||||||||| || | | |||||||
Sbjct 720 TAGGAGCTCACGGCGTGGTTACAGAAGCAGAAGTGCCGGAAGC-GA-G--A--GGAGTGT 773
Query 1939 CTTCTCATACCAACAGAATAACTATAACAATAATCGGCGGATACATTCCTTCTCTGATTG 1998
|||||| | || | ||| |||||||| |||||||||||||||||
Sbjct 774 CTTCTC---------G--TA-C-----CAA----CGGCGGATGCATTCCTTCTCTGATTG 812
Query 1999 TGCATGGTCCACCTCCTGTGGCGGAGAAGCGGTGGCTCAGCCGAAGGAT 2047
|||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 813 TGCATGGTCCACCTCCTGTGGCGGAGAAGCGGTGGCTCCGTCAAAGGAT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105772548315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5