BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934121
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1467 0.0
> AT2G35130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:14807449-14810229 REVERSE LENGTH=2139
Length=2139
Score = 1467 bits (794), Expect = 0.0
Identities = 887/931 (95%), Gaps = 9/931 (1%)
Strand=Plus/Plus
Query 117 AGATATTTGGGTTTTGGACTCGCTAATCTCAATGGTGCTACTGTTAAAAGCTATAAGCAA 176
|||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||
Sbjct 281 AGATATTTGGGTTTTGGAGTCACAAATCTCAATGGTGCCACTGTTAAAAGCTATAAGCAA 340
Query 177 GAGGGGTTTGTCATAGATGAACGTGGGAAATTAAAAAGATTTAGTAGGAAGAAACTCTCG 236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 341 GAGGGGTTTGTCATAGATGAACGTGGGAAATTAAAAAGATTTAACAGGAAGAAACTCTCC 400
Query 237 AGGAAGCGTTGTGGCTCTTTGAGAGGGCGAGGATGGAAATATGGATCCGGGTTTGTCGAT 296
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGGAAACGATGTGGCTCTTTGAGAGGGCGAGGATGGAAATATGGATCCGGGTTTGTCGAT 460
Query 297 GGGATCTTTCCTGTTCTGAGTCCCATTGCTCAGAAGATTCTGAGCTTTATTCAGAAAGAA 356
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GGGATATTTCCTGTTCTGAGTCCCATTGCTCAGAAGATTCTGAGCTTTATTCAGAAAGAA 520
Query 357 ACTGATCCTGACAAAGTAGCTGATGTCCTTGGAGCTCTTCCTTCTACACATGCCTCATGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ACTGATCCTGACAAAGTAGCTGATGTCCTTGGAGCTCTTCCTTCTACACATGCCTCATGG 580
Query 417 GATGATCTAATCAATGTTTCTGTGCAACTTCGTTTGAATAAGAAATGGGATTCAATTATC 476
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 581 GACGATCTAATCAATGTTTCTGTGCAACTTCGTTTGAACAAGAAATGGGATTCTATTATC 640
Query 477 CTGGTGTGTGAGTGGATTTTAAGGAGGGGCTCCTTTCAGCCTGATGTAATCTGCTTCAAT 536
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 641 TTGGTGTGTGAGTGGATTTTAAGGAAGAGCTCCTTTCAGCCTGATGTAATCTGCTTCAAT 700
Query 537 TTGCTTATAGATGCTTATGGACAGAAGTTCCGGTACAAGGAGGCGGAATCACTCTATGTA 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 TTGCTTATAGATGCTTATGGACAGAAGTTCCAGTACAAGGAGGCGGAATCACTCTATGTA 760
Query 597 CAACTTCTTGAATCCCGCTGCGTGCCTACGGAAGACACATACACTCTTCTTATAAAGGCA 656
|| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 761 CAGCTTCTTGAATCCCGCTATGTGCCTACGGAAGACACATACGCTCTTCTTATAAAGGCA 820
Query 657 TACTGTATAGCAGGGCTCATAGAGAAAGCTGAAGCTGTTTTAATCGAGATGCAAAATCAT 716
|||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 821 TACTGTATGGCAGGGCTCATAGAGAGAGCTGAAGTTGTTTTAGTCGAGATGCAAAATCAT 880
Query 717 CATGTTTCTCCAAG---T---G-T-TA-CTGTATACAATGCCTATATCGAGGGGTTAATG 767
||||||||||||| | | | || ||||||||||||||||||| ||||||||||||
Sbjct 881 CATGTTTCTCCAAAAACTATAGGTGTAACTGTATACAATGCCTATATTGAGGGGTTAATG 940
Query 768 AAGAGGAAAGGAAACACCGAACAAGCAATCGATGTTTTCCAGAGGATGAAGCGTGATCGA 827
||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 941 AAGAGAAAAGGAAACACCGAAGAAGCGATTGATGTTTTCCAGAGGATGAAGCGTGATCGA 1000
Query 828 TGCAAACCAACCACTGAAACTTACAACTTGATGATAAATTTATACGGAAAGGCAAGTAAA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGCAAACCAACCACTGAAACTTACAACTTGATGATAAATTTATACGGAAAGGCAAGTAAA 1060
Query 888 TCATACATGTCCTGGAAATTATTTTGTGAAATGAGAAGTCACCAATGTAAACCGAACATC 947
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCATATATGTCCTGGAAATTGTATTGTGAAATGAGAAGTCACCAATGTAAACCGAACATC 1120
Query 948 TGCACATACACAGCGCTTGTGAATGCATTTGCTAGAGAAGGTCTTTGCGAGAAAGCCGAA 1007
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1121 TGCACATACACAGCGCTTGTGAATGCATTTGCTAGAGAAGGTCTTTGCGAGAAAGCTGAA 1180
Query 1008 GAAATATTTGAACAGCTTCAAGAAGATGGGC 1038
|||||||||||||||||||||||||||||||
Sbjct 1181 GAAATATTTGAACAGCTTCAAGAAGATGGGC 1211
Score = 1201 bits (650), Expect = 0.0
Identities = 718/752 (95%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 1047 AGTCGTGCAGGTTATCCGTATGGTGCTGCTGAGATTTTCTCTCTGATGCAACATATGGGA 1106
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 AGTCGTGCAGGTTATCCATATGGTGCTGCTGAGATTTTCTCTCTAATGCAACATATGGGA 1315
Query 1107 TGTGAACCAGACAGAGCTTCCTACAATATCATGGTCGATGCATATGGCAGAGCAGGTCTT 1166
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1316 TGTGAACCAGACAGAGCTTCCTACAATATCATGGTTGATGCATATGGCAGAGCAGGTCTT 1375
Query 1167 CACTCAGATGCAGAAGCTGTGTTTGAAGAAATGAAGAGGCTAGGCATAGCACCGACAATG 1226
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1376 CACTCAGATGCAGAAGCTGTGTTTGAAGAAATGAAGAGACTAGGCATAGCACCGACGATG 1435
Query 1227 AAATCCCACATGCTGCTTCTATCAGCTTACTCTAGAGCCAGAGACGTCACAAAATGTGAA 1286
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1436 AAATCCCACATGCTGCTTCTATCAGCTTACTCTAAAGCCAGAGACGTAACAAAATGTGAA 1495
Query 1287 GCCATTGTGAAAGAAATGAGCGAAAACGGAGTAGAACCAGACACATTTGTCCTAAACAGC 1346
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1496 GCCATTGTGAAAGAAATGAGCGAAAACGGAGTAGAACCGGATACATTTGTCCTAAACAGC 1555
Query 1347 ATGCTCAACTTATACGGCCGGTTAGGGCAGTTCACCAAGATGGAAAAGATTCTAGCTGAG 1406
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1556 ATGCTCAACTTATATGGCCGGTTAGGGCAGTTCACGAAAATGGAAAAGATTCTAGCCGAG 1615
Query 1407 ATGGAGAATGGTCCTTGCACCGCGGACATAAGCACATACAACATTTTGATCAATATCTAC 1466
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1616 ATGGAGAACGGTCCTTGCACCGCGGATATAAGCACATACAACATTTTGATCAATATCTAT 1675
Query 1467 GGTAAAGCCGGGTTCTTGGAGAGAATTGAAGAGCTTTTCGTCGAGCTCAAGGAGAGGAAT 1526
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||
Sbjct 1676 GGTAAAGCCGGGTTCTTGGAGAGAATTGAAGAACTTTTTGTGGAGCTCAAGGAGAAGAAT 1735
Query 1527 TTCAGACCAGACGTTGTGACATGGACCTCGAGGATCGGTGCTTACTCAAGGAAGAAACTG 1586
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1736 TTCAGACCAGACGTTGTGACATGGACCTCGAGGATTGGTGCTTACTCAAGGAAGAAACTG 1795
Query 1587 TATGTAAAATGTTTAGAGATTTTTGAAGAGATGATTGATTCAGGTTGTGCACCAGATGGA 1646
||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TATGTGAAATGTCTGGAGGTTTTTGAAGAGATGATTGATTCAGGTTGTGCACCAGATGGA 1855
Query 1647 GGAACAGCTAAGGTTCTTCTTTCAGCTTGTTCTAGTGAAGATCAAGTGGAACAAGTTACT 1706
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1856 GGAACAGCCAAGGTTCTTCTTTCGGCTTGTTCTAGTGAAGAGCAAGTGGAACAAGTTACT 1915
Query 1707 TCAGTGCTTAGAACAATGCATAAGGGTGTGTCTGTGAGTTCTCTTGTCCCAAACCTAATG 1766
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||| || |||
Sbjct 1916 TCAGTGCTTAGAACAATGCACAAGGGCGTGACTGTGAGTTCTCTTGTCCCAAAGCTGATG 1975
Query 1767 GCTAAATCTTTAACTGTAAACTGAAAAAGATA 1798
|||||||||||||||||||||||| |||||||
Sbjct 1976 GCTAAATCTTTAACTGTAAACTGATAAAGATA 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5