BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934124
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35155.1 | Symbols: | Trypsin family protein | chr2:1481899... 2994 0.0
> AT2G35155.1 | Symbols: | Trypsin family protein | chr2:14818994-14821965
REVERSE LENGTH=2263
Length=2263
Score = 2994 bits (1621), Expect = 0.0
Identities = 1730/1782 (97%), Gaps = 10/1782 (1%)
Strand=Plus/Plus
Query 1 AAGTAGCATTGTAAAAGGAGATGAATTTGGGAGCTTGGGGTCAGAGATTCATCCAAGCAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AAGTAGCATTGTAAAAGGAGATGAATTTGGGAGCTTGGGGTCAGAGATTCATCCAAGCAG 348
Query 61 CAGCTTCTTCTGAATCCGAGGATTCTGCTTTGGATTTGGAGAGAAATCATCACTGCAATC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CAGCTTCTTCTGAATCGGAGGATTCTGCTTTGGATTTGGAGAGAAATCATCACTGCAATC 408
Query 121 ACTTGAGTCTTCCGTCATCTTCAACTCCATCTCCTCTTCAGCCATTCACACTCAACATCC 180
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 409 ACTTGAGTCTTCCATCATCTTCAAGTCCATCTCCTCTTCAGCCATTCACACTCAACATCC 468
Query 181 AACATGCAGAGAGCAATGCCCCTTACTTCTCGTGGCCTACTCTCAGTAGGCTTAACGATG 240
||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 469 AACATGCTGAGAGCAATGCCCCTTACTTCTCCTGGCCTACGCTCAGCAGGCTTAACGACA 528
Query 241 CTGTTGAAGACCGAGCTAACTACTTTGGTAATCTTCAGAAAGGGGTTTTACCAGAAACTG 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 529 CTGTTGAAGACCGAGCTAACTACTTTGGTAATCTCCAGAAAGGGGTTTTACCAGAAACTG 588
Query 301 TTGGCAGGTTGCCATCAGGACAACAAGCCACTACTTTGCTTGAGCTCATGACCATCAGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TTGGCAGGTTGCCATCAGGACAACAAGCCACTACTTTGCTTGAGCTCATGACCATCAGAG 648
Query 361 CGTTTCATAGTAAAATCCTGCGCCGCTTCAGCCTTGGTACTGCGGTTGGGTTTCGGATCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CGTTTCATAGTAAAATCCTGCGCCGCTTCAGCCTTGGTACTGCGGTTGGGTTTCGGATCA 708
Query 421 GCCGTGGTGTTCTAACGAATGTTCCAGCAATACTTGTCTTTGTTGCTAGGAAAGTCCATA 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 709 GCCGTGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCATA 768
Query 481 GGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGGGCCCTGGAGGGGTAT 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 769 GGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGGGTCCTGGAGGGGTAT 828
Query 541 GGTGCGATGTCGATGTTGTGGAATTCCAATATTACGGTGCTCCTGCTGCAACACCAAAGG 600
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 829 GGTGCGATGTAGATGTTGTGGAATTCCAATACTACGGTGCTCCTGCTGCAACACCAAAGG 888
Query 601 AACAAGTTTATAATGAACTTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACAAGTTTATAATGAACTTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTG 948
Query 661 GTTCTCAGGTTGCAAGCCAAGAAACGTATGGAACCTTGGGAGCCATAGTGAAAAGCAGAA 720
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 949 GTTCTCAGGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAA 1008
Query 721 CAGGTAACCATCAGGTTGGATTTC-TTACCAATCGGCATGTCGCAGTTGATTTGGATTAT 779
|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 CAGGTAACCACCAGGTTGG-TTTCCTTACCAATCGGCATGTCGCAGTTGATTTGGATTAT 1067
Query 780 CCAAGCCAGAAAATGTTTCATCCTTTACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CCAAGCCAGAAAATGTTTCATCCTTTACCTCCAAGCCTTGGACCGGGTGTCTACCTCGGT 1127
Query 840 GCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTACGGCATATTTGCTGGC 899
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 GCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTATGGCATATTTGCTGGC 1187
Query 900 ACAAATCCAGAAACATTTGTAAGAGCGGACGGTGCCTTTATTCCTTTTGCAGAAGATTTC 959
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 ACAAATCCAGAAACGTTTGTGAGAGCGGATGGTGCCTTTATTCCTTTTGCAGAAGATTTC 1247
Query 960 AACACGAGCAATGTAACTACCGT-GATAAAGGGCATTGGTGAAATAGGAAATGTACACGT 1018
|||||||||||||||||||| || |||||||||||||||||| |||||| |||| |||||
Sbjct 1248 AACACGAGCAATGTAACTAC-GTTGATAAAGGGCATTGGTGAGATAGGAGATGTGCACGT 1306
Query 1019 TATAGACTTGCAATCCCCAATTGATAGCCTTATTGGGAAACAAGTTGTCAAAGTTGGAAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TATAGACTTGCAATCCCCAATTGATAGCCTTATTGGGAAACAAGTTGTCAAAGTTGGAAG 1366
Query 1079 AAGCTCTGGATATACCACCGGAACCATAATGGCTTATGCTTTGGAATACAACGACGAGAA 1138
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1367 AAGCTCTGGATATACCACCGGAACCATAATGGCTTATGCATTGGAATACAACGACGAGAA 1426
Query 1139 AGGGATCTGTTTCCTCACGGATTTTCTGGTCATTGGCGAAAACCAGCAAACTTTTGACCT 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1427 AGGGATCTGTTTCCTCACGGATTTTCTGGTCATTGGTGAAAACCAGCAAACTTTTGACCT 1486
Query 1199 TGAAGGTGACAGTGGAAGCCTAATACTCTTAACGGGTCCAAATGGTCAGAAGCCAAGACC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1487 TGAAGGTGACAGTGGAAGCCTAATACTCTTAACGGGTCCAAATGGTCAGAAGCCACGACC 1546
Query 1259 AGTTGGGATCATTTGGGGAGGGACAGCCAACCGCGGAAGACTTAAACTCATAGCTGGTCA 1318
||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1547 AGTTGGGATCATTTGGGGAGGAACAGCCAACCGAGGAAGACTTAAACTAATAGCCGGTCA 1606
Query 1319 AGAACCCGAGAACTGGACAAGCGGAGTTGATCTTGGTCGCCTTTTGGATCTCTTGGAGCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AGAACCCGAGAACTGGACAAGCGGAGTTGATCTTGGTCGCCTTTTGGATCTCTTGGAGCT 1666
Query 1379 TGATCTCATCACATCAAACCATGAGCTTGAAGCAGCAGCA-C-G-A-GA-AC-AAAGAAA 1432
||||||||||||||| |||||||| ||||||||||||||| | | | || | |||||||
Sbjct 1667 TGATCTCATCACATCCAACCATGAACTTGAAGCAGCAGCAGCAGCACGAGAAGAAAGAAA 1726
Query 1433 CACTTCGGTTACAGCCCTCGATTCAACGGTTAGCCAGTCATCCCCGCCGGACCCGGTTCC 1492
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1727 CACTTCGGTTACAGCCCTTGATTCAACCGTTAGCCAGTCATCCCCGCCTGACCCGGTTCC 1786
Query 1493 ATCAGGAGACAAACAAGATGAGAGCTTTGAGCCATTTATTCCGCCTGAGTTTCATATAGA 1552
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1787 ATCAGGAGACAAACAAGATGAGAGCTTTGAGCCATTTATTCCGCCTGAGTTCCATATAGA 1846
Query 1553 AGAAGCAATCAAACCAACACCTGAAGTAGAGGAACATATCTTCATTGCTCCTATATCGGT 1612
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1847 AGAAGCAATCAAACCAACACTTGAAGTTGAGGAACATATCTTCATTGCTCCTATATCGGT 1906
Query 1613 TAACGAGTCTACTTCCGCCATTAAAGGGCAAGAGAAACCCAAATTGGATAATCTCATGGC 1672
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1907 TAACGAGTCTACTTCCGCCATTAAAGGGCAAGAGATACCCAAATTGGATAATCTCATGGC 1966
Query 1673 TTTAAAGAACAGTTCCGAAGAAGAGGTTAACGTATCGTTGCATCTAGGTGAGCCCAAACT 1732
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1967 TTTAAAGAACAGTTCCGAAGAAGAGGTTAACATATCGTTGCATCTAGGTGAGCCCAAACT 2026
Query 1733 AAAGAAGCCAAAGtttttttAGCTGAACCAGGAAATTGATCT 1774
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 AAAGAAGCCAAAGTTTTTTTAGCTGAACCAGGAAATTGATCT 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5