BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934125

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35160.1 | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr...   110    7e-24


> AT2G35160.1 | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14822824-14826162 
FORWARD LENGTH=2798
Length=2798

 Score =  110 bits (59),  Expect = 7e-24
 Identities = 76/83 (92%), Gaps = 5/83 (6%)
 Strand=Plus/Minus

Query  119  AAGGAATACTGATAATGGCGGAGATGACGACGAGTCGATTGGCCGGAGCGGGAGATATGT  178
            ||||| || ||||||||||||||||   |||||||||||||||||||||||||||||  |
Sbjct  173  AAGGAGTAGTGATAATGGCGGAGAT---GACGAGTCGATTGGCCGGAGCGGGAGATA--T  119

Query  179  GTGAGTCGCCTACTCAAATTGGG  201
            |||||||||||||||||||||||
Sbjct  118  GTGAGTCGCCTACTCAAATTGGG  96



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5