BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934126
Length=2449
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35160.1 | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr... 2507 0.0
> AT2G35160.1 | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14822824-14826162
FORWARD LENGTH=2798
Length=2798
Score = 2507 bits (1357), Expect = 0.0
Identities = 1582/1689 (94%), Gaps = 21/1689 (1%)
Strand=Plus/Plus
Query 762 GTTAGGATAATTACAAACAAAGGGGTTGCAATGCCTCCACCCTTGAAGCCTTCCGAGAAG 821
||| ||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 921 GTTTGGATAATTACAGACAAAGGGGTTGTAATGCCTTCACCAGTGAAGCCTTCCGAGAAG 980
Query 822 ACCAATGGAGATTATGGTGAAGGATCTATGAGGAAGAATAGTGAGAGGGTTGCCCCGGAT 881
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 981 AGGAATGGAGATTATGGTGAAGGATCTATGAGGAAGAATAGTGAGAGGGTTGCCCTGGAT 1040
Query 882 AAAAAGAGATTAGCTCGT-AATCCTCGGTTATCAAATGGTGGGCTTCCTAGTGGCTCAAG 940
||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1041 AAAAAGAGATTAGCTAGTAAAT-TTCGGTTATCAAATGGTGGGCTTCCTAGTTGCTCAAG 1099
Query 941 CAGTGGGGATAGTGCTCGGTACAAAGTTAAGGAAACTCTGCGTCTTTTCCATGAAACTTG 1000
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1100 CAGTGGGGATAGTGCTCGGTATAAAGTTAAGGAAACAATGCGTCTTTTCCATGAAACTTG 1159
Query 1001 TaaaaaaaTTATGCAGGAGGAAGAAGCAAGGCCTAGGAAAAGAGATGGTAGCAAGTTCAG 1060
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1160 TAAAAAAATTATGCAAGAGGAAGAAGCAAGGCCTAGGAAAAGAGATGGTGGCAATTTCAA 1219
Query 1061 AGTGGATAACGAGGCTTCGAAAATTCTCAAGAGTAAAGGGAAAAATCTTAACAGTGGTAC 1120
||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1220 AGTGGTTTGCGAGGCTTCGAAAATTCTCAAGAGTAAAGGGAAAAATCTTTATAGTGGTAC 1279
Query 1121 TCAGATTATTGGAACCGTGCCTGGTGTTGAGGTTGGCGATGAATTTCAATATAGAATGGA 1180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 TCAGATTATTGGAACTGTGCCTGGTGTTGAGGTTGGCGATGAATTTCAATATAGAATGGA 1339
Query 1181 GCTGAACTTTCTTGGTATACATAGACCAAGTCAAAGTGGTATCGATTATATGAAAGATGA 1240
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1340 GCTGAACCTTCTTGGTATACATAGACCAAGTCAAAGTGGTATCGACTATATGAAAGATGA 1399
Query 1241 CGGCGAGGAACTAGTTGCCACGAGTATTGTATCCTCTGGAGGTTATGATGACGTGGTTGA 1300
||| | |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 1400 CGGTGGGGAACTAGTTGCCACGAGTATTGTATCCTCGGGAGGTTATAATGACGTGCTTGA 1459
Query 1301 TAACTCGGATGTCTTGATCTACACGGGTCAAGGCGGAAATGTGGGGAAAAAGGGAAAGAA 1360
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1460 TAACTCTGATGTCTTGATCTACACGGGTCAAGGCGGAAATGTGGGGAAAAA--GAAA-AA 1516
Query 1361 AAAT-AATGAACCCAAAGACCAACAGCTTGTAACGGGAAACCTTGCGTTGAAAAACAGTA 1419
||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1517 TAATGAA-CCACCCAAAGACCAGCAGCTTGTAACGGGAAACCTTGCGTTGAAAAACAGTA 1575
Query 1420 TACACAAAAAGAACCCTGTGCGGGTCATAAGAGGCATTAAAAATACGACACTACAATCAT 1479
|| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1576 TAAACAAAAAGAACCCTGTGCGGGTCATAAGAGGCATCAAAAATACGACATTACAATCAT 1635
Query 1480 CAGCTGTTGCAAAGAATTATGTTTACGATGGATTGTATCTGGTGGAAGAGTACTGGGAAG 1539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CAGTTGTTGCAAAGAATTATGTTTACGATGGATTGTATCTGGTGGAAGAGTACTGGGAAG 1695
Query 1540 AAACTGGGTCTCATGGTAAGCTCGTCTTCAAGTTCAAACTGCGGCGTATTCCTGGACAAC 1599
|||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1696 AAACCGGGTCTCACGGTAAACTCGTCTTCAAGTTCAAACTACGGCGTATTCCTGGACAAC 1755
Query 1600 CCGAGCTTCCCTGGAAAGTGGTTGAGAAATC-AAAGAAATCCGAGTTGCGGGACGGTCTT 1658
|||||||||||||||||| ||||| |||||| ||| ||||| ||||| ||||| ||||||
Sbjct 1756 CCGAGCTTCCCTGGAAAGAGGTTGCGAAATCGAAA-AAATCTGAGTTCCGGGATGGTCTT 1814
Query 1659 TGCAATGTTGATATCTCAGAAGGGAAAGAGACATTACCCATATGCGCTGTGAACAATATA 1718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1815 TGCAATGTTGATATCACAGAAGGGAAAGAGACATTACCCATATGCGCTGTGAACAATTTA 1874
Query 1719 GATGATGAGAAACCACCTCCGTTTATCTACACGGTTAAAATGATATATCCGGATTGGTGC 1778
|| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1875 GACGATGAGAAACCGCCACCGTTTATCTACACGGCTAAAATGATATATCCGGATTGGTGC 1934
Query 1779 CGGCCAATTCCTCCAAAGAGCTGTGGTTGCACAAAAC-GCTGCTCCGAA-TCAAAAAAGT 1836
||||||||||||||||||||||| |||||||| |||| |||||||| || |||||||| |
Sbjct 1935 CGGCCAATTCCTCCAAAGAGCTGCGGTTGCAC-AAACGGCTGCTCC-AAGTCAAAAAACT 1992
Query 1837 GTGCCTGCGTTGTGAAAAACGGTGGAGAGATACCGTACAATTATGATGGAGCCATTGTTA 1896
|||||||| ||||||||||||||||| ||||||| | |||| |||||||||||||||
Sbjct 1993 GTGCCTGCATTGTGAAAAACGGTGGAAAGATACC-T--TATTACGATGGAGCCATTGTT- 2048
Query 1897 G-TATAAAGCCCCTGGTCTATGAGTGTGGCCCACACTGCAAATGCCCACCTTCTTGCTAC 1955
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2049 GAAATTAAGCCCCTGGTCTATGAGTGTGGCCCACACTGCAAATGCCCACCTTCTTGCAAC 2108
Query 1956 ATGAGAGTCTCACAGCACGGGATCAAGATCAAGCTGGAGATCTTCAAAACGGAGTCAAGA 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 ATGAGAGTCTCACAGCACGGGATCAAGATCAAGCTGGAGATCTTCAAAACGGAGTCAAGA 2168
Query 2016 GGATGGGGAGTGAGATCGCTGGAATCTATTCCTATCGGAAGCTTTATCTGTGAGTACGCA 2075
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2169 GGTTGGGGAGTGAGATCGCTGGAATCTATTCCTATCGGGAGCTTCATCTGTGAGTACGCA 2228
Query 2076 GGAGATCTTCTAGAGGATAAACAAGCAGAAAGACTTACCGGGAAAGATGAGTATCTCTTT 2135
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 2229 GGAGAGCTTCTAGAGGATAAACAAGCTGAAAGCCTTACCGGGAAAGATGAGTATCTTTTT 2288
Query 2136 GAACTCGGGGAGGAGGAGGATCAGTTCACCATAGACGCAGCACGGAAAGGGAACATAGGG 2195
|| |||||||| ||||| |||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 2289 GATCTCGGGGACGAGGATGATCCGTTCACCATAAACGCAGCACAGAAAGGGAACATAGGG 2348
Query 2196 AGGTTTATAAACCATAGCTGCTCACCGAATCTGTACGCACAGGACGTATTGTACGACCAT 2255
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2349 AGGTTTATAAACCATAGCTGCTCGCCGAATCTGTACGCACAGGACGTATTGTACGACCAT 2408
Query 2256 GAGGACACAAGAATACCTCACATTATGTTCTTTGCACTGGACCATATACCTCCACTTGAG 2315
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2409 GAGGAAATAAGAATACCTCACATTATGTTCTTTGCACTGGACAATATACCTCCACTTCAG 2468
Query 2316 GAACTCTCATACGACTACAATTATAAGATCGATCAGGTA-ACCGACTCTAATGGTAATAT 2374
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2469 GAACTCTCGTACGACTACAATTATAAGATCGATCAGGTATAC-GACTCTAATGGTAATAT 2527
Query 2375 CAAGAAGAAAATTTGCTACTGTGGTTCCGCTGAGTGTAGTGGTAGGCTCTACTAAGTAAG 2434
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2528 CAAGAAGAAATTTTGCTATTGTGGTTCCGCTGAGTGTAGTGGTAGGCTCTACTAA-TAAG 2586
Query 2435 CTGTTGTTA 2443
|||||||||
Sbjct 2587 CTGTTGTTA 2595
Score = 730 bits (395), Expect = 0.0
Identities = 608/705 (86%), Gaps = 38/705 (5%)
Strand=Plus/Plus
Query 12 TTGGACAACATGGTACATTCAGAGTCATCAA-AGCTCATTTCGTTGCGCGGTGGT-A--- 66
|||| || ||||||||||||||||||||||| | || | ||| |||||||||||| |
Sbjct 189 TTGGGCATCATGGTACATTCAGAGTCATCAATA-CTTAGTTCCTTGCGCGGTGGTGATGG 247
Query 67 --GTGG---TCCTTTTTCTAAGGATGAACTAGCAACAAATGGTAGTTATACCGATCCTAT 121
|||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 248 CGGTGGTATTCCTTGTTCTAAGGATGAACTAGCAATAAATGGTAGTTACACCGATCCTAT 307
Query 122 GGGGCGGAGGAAGTCCAAGCGGTTTAAGCTTGCAGCGGAAAGTGAGTTTTCACCTGATTG 181
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 308 GGGGCGGAGGAAGTCCAAGCGGTTTAAGGTTGCTGCGGAAAGTGAGTTTTCACCTGATTT 367
Query 182 TGGATCGGGTT-CCATGCGGCTCAGATCGAGAACTATACAGAAGGAGCTC-CAAATTGAG 239
||||||| || ||| || |||||||||||||| || ||||||||| || || |||||
Sbjct 368 TGGATCGA-TTACCAGGCAGCTCAGATCGAGAAGAATGCAGAAGGAGTTCACAG-TTGAG 425
Query 240 ACTTGCGAGAACAGGAATGCTTCTGAAGTT-G--------------A-G--G-T-T-GAG 278
|||| ||||| |||||||| |||||| ||| | | | | | | |||
Sbjct 426 ACTTACGAGACCAGGAATGTTTCTGATGTTTGTGTTCTCTCTTCTCAAGCTGATGTTGAG 485
Query 279 TTGATTCCTGGAGAAAAAGTGGCAGATCGAGATGGCTTTAAATCCGTTGATTGTAATGAC 338
|||||||||||||||| || ||||| ||||| ||||||| || |||||||||||||||
Sbjct 486 TTGATTCCTGGAGAAATTGTTGCAGAAAGAGATAGCTTTAAGTCGGTTGATTGTAATGAC 545
Query 339 ATGTCGGCTGGAGT-AACCGAAGGAGCTAAATCTCTTCGAGTTAATATGCAAGAACCAAT 397
||||||| ||| || ||||||||||||| |||||||| ||||||| ||||||||||| ||
Sbjct 546 ATGTCGGTTGG-GTTAACCGAAGGAGCTGAATCTCTTGGAGTTAACATGCAAGAACCTAT 604
Query 398 GGAAGGTAGGAATCTGCCAGAGAATACAAGTGAGCAAAATTTGGTGGAGGTCCATCTTCC 457
| ||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||
Sbjct 605 GAAAGATAGGAATATGCCAGAGAACACAAGTGAGCAAAATATGGTGGAGGTCCATCCTCC 664
Query 458 AAGCATAAGCCTGCCAGAAGAAGATGTGATGGGGTCTGTTTGCAGGAAAAGTATCACCGG 517
|||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 665 AAGCATAAGCCTGCCAGAGGAAGATATGATGGGGTCTGTTTGCAGGAAAAGCATCACTGG 724
Query 518 GACAAAGGAGCTTCGCGGAAGAACGATTTCTGTAGTGAGAGACTTATCTCCAAATATGGG 577
||||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 725 AACAAAGGAGCTTCACGGAAGAACGATCTCTGTTGGGAGAGACTTATCTCCAAATATGGG 784
Query 578 GAACAAGTTTTCAAAGAGTGGAAAGACCGCTAAAGGTTCTATATCGATGGAAGAGGATAA 637
|| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 785 GAGCAAGTTTTCAAAGAATGGAAAGACCGCTAAACGTTCTATATCGGTGGAAGAGGAAAA 844
Query 638 CTTGGTTCTGGAAAAGTCAGATTCTGGAGATCATTTGGGTCAATC 682
|||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 845 CTTGGTTCTGGAGAAGTCAGATTCTGGAGACCATTTGGGTCCATC 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121504335946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5