BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934128

Length=272
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family...   161    2e-39


> AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family 
protein | chr3:22268746-22270006 FORWARD LENGTH=592
Length=592

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 150/180 (83%), Gaps = 6/180 (3%)
 Strand=Plus/Plus

Query  88   TATGGTGCCAGTCTTAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAATAC  147
            |||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  109  TATGGTGCGAGTATCAGGAAGCAGATTAAGAAGATGGAGGTCAGCCAGCACAGCAAGTAC  168

Query  148  TTCTGTGAGTTCTGTGGCAAGTATGCTGTTAGAAG--AAAGGCTGTTCGAATTTGGGGAT  205
            ||||||||||||||||||||||| |  ||  ||||  |||||||||| | || ||||| |
Sbjct  169  TTCTGTGAGTTCTGTGGCAAGTACGGAGT--GAAGCGAAAGGCTGTTGGTATCTGGGGTT  226

Query  206  GCAGGGACTGTGGGAAACTTAAGGCTGGAGGTGCGCCTACACAATGAATACGGCTAGTGC  265
            ||| ||| ||||| ||  | ||||| || |||||   ||||||||||| || || |||||
Sbjct  227  GCAAGGATTGTGGCAAGGTCAAGGCAGGTGGTGCT--TACACAATGAACACCGCCAGTGC  284



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12466401752


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5