BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934131
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfg... 1875 0.0
> AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfgap
| chr2:14836062-14838149 FORWARD LENGTH=1535
Length=1535
Score = 1875 bits (1015), Expect = 0.0
Identities = 1172/1246 (94%), Gaps = 18/1246 (1%)
Strand=Plus/Plus
Query 1 GAATATTGTTT--CATCCCTACAATGGCGTCCGAGAATCTGAATGATAAGATCTCTGTTT 58
||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 122 GAATATTGTTTCACATCCCTACAATGGCGTCTGAGAATCTGAATGACAAGATCTCTGTTT 181
Query 59 TTAAGAAGCTCAAAGCCAAATCCGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 118
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 182 TTAAGAAACTCAAAGCCAAATCAGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 241
Query 119 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGTATCGATTGTTCTGCTGTTCATC 178
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 242 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGCATCGATTGCTCAGCTGTTCATC 301
Query 179 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCCCTG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 302 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCTCAG 361
Query 239 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAGCAGT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 362 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAACAGT 421
Query 299 ATGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACTTCGCGAGCTGCTGATTTGT 358
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 422 ACGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACCTCAAGAGCTGCTGATTTGT 481
Query 359 ATAAACAGATTCTTGCTAAAGAAGTTGTTGCTAAAAGCAAGGCCGAGGAAGTATTATTGG 418
|||||||||| |||||||||||| ||||||||||||||||| ||||||| | |||||
Sbjct 482 ATAAACAGATACTTGCTAAAGAA---GTTGCTAAAAGCAAGGCTGAGGAAG-A--ATTGG 535
Query 419 ATTTGCCTCCATCTCCTCCTGTTTCATCAACACAAGTGCCCAATGGGCTCTCCAGCATCA 478
||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 536 ATTTGCCTCCATCTCCTCCTG-AT--TCAACACAAGTGCCTAATGGACTCTCCAGCATCA 592
Query 479 AAACCAGTGAAGCTCCTAAAGAGAGTAATAATACGCTAAAGCAGCAAGAAAAGTCTGAAG 538
||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||| |
Sbjct 593 AAACCAGTGAAGCTCTTAAAGAGAG---TAATACTCTAAAGCAGCAAGAAAAGCCTGATG 649
Query 539 TTGTTCCCGTCTCACCCAGAGTTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAGGA 598
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 650 TTGTTCCCGTCTCACCAAGAATTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAAGA 709
Query 599 CAGGCAAAACAGGTGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGCGAGACTCTTT 658
|||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 710 CAGGCAAAACTGGCGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGTGGGACTCTTT 769
Query 659 ATGATCAAAAGCCAGAGGAATCTGTTGTTATACAAGCGACTTCCCCAGCTTCAGCTAAAT 718
|||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||
Sbjct 770 ATGATCAAAAGCCAGAGGAATCTGTTATTATACAAGCGACATCACCAGTTTCAGCTAAAT 829
Query 719 CAGCCAGGTCATCGTTTTCCTCTCGGTTTGATTATGCGGACAGTGTTCAAAACAGAGAAG 778
||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 830 CAGCCAGGTCATCGTTTTCCTCTCGTTTTGATTATGCGGACAATGTTCAAAACAGGGAAG 889
Query 779 ATTACATGAGCCCTCAAGTGGTTGGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 838
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 890 ATTACATGAGCCCTCAAGTCGTTAGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 949
Query 839 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 1009
Query 899 AAGTGCAAATTCAAGAAACAGATGAAGCACGGAAGAAATTCACAAACGCGAAATCAATCT 958
|| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1010 AACTGCAAATTCAAGAAACAGACGAAGCACGGAAGAAATTCACAAACGCCAAATCAATAT 1069
Query 959 CCTCTGCTCAGTA-TTTCGGAAGTGACAACAACTCGGCCGACCTTGAGGCCAAAAGTACA 1017
||||||||||||| ||| |||| |||||||||||| || || ||||||||||||||| ||
Sbjct 1070 CCTCTGCTCAGTACTTT-GGAAATGACAACAACTCTGCTGATCTTGAGGCCAAAAGTTCA 1128
Query 1018 TTGAAGAAGTTCTCCGGTTCATCAGCAATCTCTAGTGCTGATTTGTTTGGAGACAGTGAT 1077
||||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1129 TTGAAGAAGTTTTCTGGTTCATCAGCAATCTCTAGTGCTGATCTGTTTGGAGACGGTGAT 1188
Query 1078 GGAGATTTCACTCTTGATCTCACCGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCT 1137
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1189 GGAGATTTCCCTCTTGATCTCACTGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCA 1248
Query 1138 CAACAAGACATGTCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CAACAAGACATATCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1308
Query 1198 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATT--CTCTAAA 1241
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1309 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATTTTCTCTAAA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60993662175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5