BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934131 Length=1241 Score E Sequences producing significant alignments: (Bits) Value AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfg... 1875 0.0 > AT2G35210.1 | Symbols: RPA, AGD10, MEE28 | root and pollen arfgap | chr2:14836062-14838149 FORWARD LENGTH=1535 Length=1535 Score = 1875 bits (1015), Expect = 0.0 Identities = 1172/1246 (94%), Gaps = 18/1246 (1%) Strand=Plus/Plus Query 1 GAATATTGTTT--CATCCCTACAATGGCGTCCGAGAATCTGAATGATAAGATCTCTGTTT 58 ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 122 GAATATTGTTTCACATCCCTACAATGGCGTCTGAGAATCTGAATGACAAGATCTCTGTTT 181 Query 59 TTAAGAAGCTCAAAGCCAAATCCGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 118 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 182 TTAAGAAACTCAAAGCCAAATCAGATAATAAGATTTGTTTTGATTGCAATGCGAAGAACC 241 Query 119 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGTATCGATTGTTCTGCTGTTCATC 178 ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| Sbjct 242 CAACATGGGCTTCCGTTACTTACGGGATCTTTCTCTGCATCGATTGCTCAGCTGTTCATC 301 Query 179 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCCCTG 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 302 GGAGTCTTGGCGTCCACATTAGCTTCGTCAGGTCAACCAATTTAGATTCATGGAGCTCAG 361 Query 239 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAGCAGT 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 362 AGCAATTGAAAATGATGATATATGGAGGAAACAACAGGGCACAAGTCTTTTTCAAACAGT 421 Query 299 ATGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACTTCGCGAGCTGCTGATTTGT 358 | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 422 ACGGATGGAGCGATGGAGGTAAAACCGAGGCTAAGTATACCTCAAGAGCTGCTGATTTGT 481 Query 359 ATAAACAGATTCTTGCTAAAGAAGTTGTTGCTAAAAGCAAGGCCGAGGAAGTATTATTGG 418 |||||||||| |||||||||||| ||||||||||||||||| ||||||| | ||||| Sbjct 482 ATAAACAGATACTTGCTAAAGAA---GTTGCTAAAAGCAAGGCTGAGGAAG-A--ATTGG 535 Query 419 ATTTGCCTCCATCTCCTCCTGTTTCATCAACACAAGTGCCCAATGGGCTCTCCAGCATCA 478 ||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| Sbjct 536 ATTTGCCTCCATCTCCTCCTG-AT--TCAACACAAGTGCCTAATGGACTCTCCAGCATCA 592 Query 479 AAACCAGTGAAGCTCCTAAAGAGAGTAATAATACGCTAAAGCAGCAAGAAAAGTCTGAAG 538 ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||| | Sbjct 593 AAACCAGTGAAGCTCTTAAAGAGAG---TAATACTCTAAAGCAGCAAGAAAAGCCTGATG 649 Query 539 TTGTTCCCGTCTCACCCAGAGTTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAGGA 598 |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || Sbjct 650 TTGTTCCCGTCTCACCAAGAATTTCTCGCAGCGTTAAGAAACCTCTTGGTGCTAAGAAGA 709 Query 599 CAGGCAAAACAGGTGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGCGAGACTCTTT 658 |||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 710 CAGGCAAAACTGGCGGACTTGGCGCCCGGAAGCTAACTACTAAGTCGAGTGGGACTCTTT 769 Query 659 ATGATCAAAAGCCAGAGGAATCTGTTGTTATACAAGCGACTTCCCCAGCTTCAGCTAAAT 718 |||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||||| Sbjct 770 ATGATCAAAAGCCAGAGGAATCTGTTATTATACAAGCGACATCACCAGTTTCAGCTAAAT 829 Query 719 CAGCCAGGTCATCGTTTTCCTCTCGGTTTGATTATGCGGACAGTGTTCAAAACAGAGAAG 778 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| Sbjct 830 CAGCCAGGTCATCGTTTTCCTCTCGTTTTGATTATGCGGACAATGTTCAAAACAGGGAAG 889 Query 779 ATTACATGAGCCCTCAAGTGGTTGGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 838 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 890 ATTACATGAGCCCTCAAGTCGTTAGTCATGTAGCTCCACCAAAATCATCAGGCTTCTTTG 949 Query 839 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 AGGAAGAGTTGGAGATGAACGGAGGCAGGTTTCAGAAGAAACCAATCACAAGTTCCTCAA 1009 Query 899 AAGTGCAAATTCAAGAAACAGATGAAGCACGGAAGAAATTCACAAACGCGAAATCAATCT 958 || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 1010 AACTGCAAATTCAAGAAACAGACGAAGCACGGAAGAAATTCACAAACGCCAAATCAATAT 1069 Query 959 CCTCTGCTCAGTA-TTTCGGAAGTGACAACAACTCGGCCGACCTTGAGGCCAAAAGTACA 1017 ||||||||||||| ||| |||| |||||||||||| || || ||||||||||||||| || Sbjct 1070 CCTCTGCTCAGTACTTT-GGAAATGACAACAACTCTGCTGATCTTGAGGCCAAAAGTTCA 1128 Query 1018 TTGAAGAAGTTCTCCGGTTCATCAGCAATCTCTAGTGCTGATTTGTTTGGAGACAGTGAT 1077 ||||||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1129 TTGAAGAAGTTTTCTGGTTCATCAGCAATCTCTAGTGCTGATCTGTTTGGAGACGGTGAT 1188 Query 1078 GGAGATTTCACTCTTGATCTCACCGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCT 1137 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1189 GGAGATTTCCCTCTTGATCTCACTGCGGGTGATCTTCTCAACCGCCTATCTCTCCAGGCA 1248 Query 1138 CAACAAGACATGTCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1197 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 CAACAAGACATATCATCATTGAAGAACATGGCAGAGGAGACAAAGAAGAAGCTTGGCTCT 1308 Query 1198 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATT--CTCTAAA 1241 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1309 GTTGCTTCCAGCTTATGGGTTTGAAATGTTCATAATTTTCTCTAAA 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60993662175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5