BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934133

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35215.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   551    2e-156


> AT2G35215.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G46770.1); 
Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14839091-14839799 
FORWARD LENGTH=709
Length=709

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 341/362 (94%), Gaps = 2/362 (1%)
 Strand=Plus/Plus

Query  1    TTCCGTAAGAAACAGAAACAATGAGCCTGAACTGCCTCGCTTGCCACATCTTGCAAAGAA  60
            ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  186  TTCCGTAAGAACCAGAAACTATGAGCCTGAACTGCCTCGCTTGCCACATCTTGCAAAGAA  245

Query  61   CAGACTCGGACAGAGAAATAGGAAGCCTTAAAGATTCAAACTTCAAAGAAAATTTCGCAA  120
            |||||||||||||||| || ||||||| ||||||||||| ||| |||||||| |||||||
Sbjct  246  CAGACTCGGACAGAGACATGGGAAGCCGTAAAGATTCAAGCTTTAAAGAAAACTTCGCAA  305

Query  121  CTTCAAG-GTATGACAAGATGGTAAGGAACAGATCATCGTTGCCAGTAGTAAGACGGGTT  179
            | || || || ||| ||||||||||||||||||||||||||||| ||||| |||||||| 
Sbjct  306  CGTC-AGCGTTTGAAAAGATGGTAAGGAACAGATCATCGTTGCCCGTAGTGAGACGGGTC  364

Query  180  AATAAGGGTCATCGCAGGCTTTACAGTGCGGAGATCATGGTCTATGGGGAACTGGACGAG  239
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  365  AATAAGGGTCATCGCAGGCTTTACAGTGCGGACATCATGGTCTATGGGGAACTGGACGAG  424

Query  240  CCCAAGCTGGTCAGAAGCAGTGGGATCAGAAGGGATTGGAGCTTTGAGGATCTAAAGAAA  299
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  425  CCCAAGCTGGTCAGAAGCAGTGGGATCAGAAGGGATTGGAGTTTTGAGGATCTAAAGAAA  484

Query  300  AATAAAGATCAGCTAAGAATTGAAGAGACAATAAAGGAATAAAACAGATCCTTTTGCTAG  359
             | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  485  CACAAAGATCAGCTAAGAATTGAAGAGACAATAAAGGAATAAGACAGATCCTTTTGCTAG  544

Query  360  GT  361
            ||
Sbjct  545  GT  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16940231413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5