BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934138

Length=244
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35260.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   169    1e-41


> AT2G35260.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17840.1); 
Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14849536-14851969 
FORWARD LENGTH=1623
Length=1623

 Score =  169 bits (91),  Expect = 1e-41
 Identities = 97/100 (97%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  120  GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAATTGATTCATCTGGTGGATTTGATCCTTCTCTTGATGCACTACTTGCTGGACTTGGCT  578

Query  180  ATGCAACACCACCAATCATGGCTCTTCTCTCCGTTCTCGA  219
            |||||||||||||||||||||||||||||| | | |||||
Sbjct  579  ATGCAACACCACCAATCATGGCTCTTCTCTTCATACTCGA  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11058904780


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5