BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934151

Length=720
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41440.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  93.5    3e-18


> AT2G41440.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G41470.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr2:17271172-17274370 FORWARD LENGTH=1709
Length=1709

 Score = 93.5 bits (50),  Expect = 3e-18
 Identities = 104/128 (81%), Gaps = 12/128 (9%)
 Strand=Plus/Plus

Query  13   AGATTGAAGATGAAGGGAAAAGATATCATGAAGAAGACGACGAGAGTGCCATGCAATTTC  72
            ||| |||||| |||| ||| |||| | | ||| ||||||| ||| | ||| |||||||||
Sbjct  554  AGA-TGAAGAGGAAGCGAAGAGATCTAACGAACAAGACGA-GAG-G-GCCCTGCAATTTC  609

Query  73   TGCGAATTCTCCAGCAGCAGATACGGAT-----T-TGAACA-AAGTCTACAGGATCAAGA  125
            ||||||||||||||||||||||| ||||     | |||| | ||| || ||||| |||||
Sbjct  610  TGCGAATTCTCCAGCAGCAGATATGGATGCAGCTCTGAAGATAAG-CTGCAGGAGCAAGA  668

Query  126  CAATGAAG  133
            ||||||||
Sbjct  669  CAATGAAG  676



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34912732165


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5