BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934165
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35460.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 773 0.0
AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1... 111 8e-24
> AT2G35460.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:14905788-14906504
FORWARD LENGTH=717
Length=717
Score = 773 bits (418), Expect = 0.0
Identities = 622/718 (87%), Gaps = 23/718 (3%)
Strand=Plus/Plus
Query 36 TTAAACGGCGCCAGCTACGGTCCACCAATCCAGCCTCCGGCAAAAAAC-TACTACAGTCA 94
|||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||||||
Sbjct 13 TTAAACGGCGCCAGTTACGGTCCACCAATCAAGCCACCGG-TGAAAACTTACTACAGTCA 71
Query 95 AGGCCGACGCGGCGCTGATGTAGGTTGCAGCATCTGTCGTTGCTTCTCCAGCTGCCTCCT 154
|||||||||||| | || ||||||||| | |||||| |||| ||||||||||| |||||
Sbjct 72 TGGCCGACGCGGCTCCGACGTAGGTTGCGGTATCTGTGGTTGTTTCTCCAGCTGTCTCCT 131
Query 155 TTGCTGCGGCA-GTTGCCTCGTAAGCATCATCTGCAACATCCTCATCGGTGTAGCT-GTT 212
||| ||||| | |||| ||||||| |||||||||||||||||||||||||||| || |||
Sbjct 132 TTGTTGCGG-AGGTTGTCTCGTAAACATCATCTGCAACATCCTCATCGGTGTA-CTCGTT 189
Query 213 TGCCTCGGAGTCGTTGCTTTAATCCTCTGGTTTATCCTCCGACCAAAGGTCGTGACGTTC 272
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 190 TGCCTTGGAGTCGTTGCTTTAATCCTCTGGTTTATCCTCCGACCAAACGTCGTGAAATTC 249
Query 273 CATGTCACGGAAGCTAATTTAACGAGATTTGAGCTCGATCCACTAAATAATAACCTTCAT 332
|| || ||||||||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct 250 CAAGTTACGGAAGCTGATTTAACGCGATTTGAGTTCGATCCAAGAAGCCATAACCTTCAT 309
Query 333 TACAACCTCTCGTTGGA-TTTCTCAGCT-CGTAATCCTAATCAACGTCTTGGGATTCAAT 390
||||| |||||||| | ||| || | | |||||||||||||||||||||||||| || |
Sbjct 310 TACAATATCTCGTTGAACTTT-TC-GATACGTAATCCTAATCAACGTCTTGGGATACACT 367
Query 391 ATGATCAGTTAGAAGCT-AGGGGTTATTATGGTGATCAGCGTTTCGCGT-CTGTGAATAT 448
|||||||||||| || | || ||||| || |||||||||||||| | | ||| ||||||
Sbjct 368 ATGATCAGTTAG-AGGTGAGAGGTTACTACGGTGATCAGCGTTTTTC-TGCTGCGAATAT 425
Query 449 GCCGTCTTTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGTACTTGAACGG 508
| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 426 GACGTCGTTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGT--TA-AACGG 482
Query 509 ACTGAGCCTGGTTTTGTTAGGCGCCGGTGGCCGGAGAGATCTGGAGG-AGGATCGGGAG- 566
|| || ||||||||| | || |||||||| ||||||||| | ||| |||||||| ||
Sbjct 483 ACAGAAACTGGTTTTGCTCGGTGCCGGTGGACGGAGAGATTTT-AGGGAGGATCGG-AGG 540
Query 567 TCTGGGATTTACAGGATTGGCGTGAAGCTGAGATTTAAGATCAGGTTTAAGTTTGGGTTT 626
|||||| |||||||||| | ||||||||| ||||||||| | ||||||||||||||||||
Sbjct 541 TCTGGGGTTTACAGGATCGACGTGAAGCTCAGATTTAAGTTAAGGTTTAAGTTTGGGTTT 600
Query 627 TTCAACTCATGGGCCGTTAAGCCCAAGTTTAAGTGTCATCTCAAGGTTCCGTTGAATACC 686
|| |||||||||||||||| ||||||| |||||||||||||||| || || |||| |||
Sbjct 601 TTGAACTCATGGGCCGTTAGGCCCAAGATTAAGTGTCATCTCAAAGTCCCCTTGAGCACC 660
Query 687 TCTAGTTCAGCACGAG-GATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTTTGA 743
|||||||||| | || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 TCTAGTTCAG-ATGAAAGATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTCTGA 717
> AT5G06320.1 | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1930793-1931768
REVERSE LENGTH=976
Length=976
Score = 111 bits (60), Expect = 8e-24
Identities = 225/300 (75%), Gaps = 30/300 (10%)
Strand=Plus/Plus
Query 456 TTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGTACTTGAACGGACTGAGC 515
||||| |||||||||||||||||||||||||||||||| | ||| | |||| |||
Sbjct 472 TTTTACCAGGGACATAAGAACACGACGGTGGTTGGAACTAA--ACTCGTG-GGAC--AGC 526
Query 516 C-T-GGTTTTG-TTAGGCGCCGGTG-GCCGGAGAG-ATCTGGAGGAGGATCGGGAGT-CT 569
| ||| || || | || ||| | | ||| || || || | |||||| | || | ||
Sbjct 527 AATTGGTGCTGCTT-GACGGCGGAGAGA-GGA-AGGATTTGAACGAGGAT-GTGAATTCT 582
Query 570 GGGATTTACAGGATTGGCGTGAAGCTGAGATTTAAGATCAGGTTTAAGTTTGGGTTTTTC 629
||| || ||||| | | ||||||||| ||||||| ||||||||||||||||| ||
Sbjct 583 CAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGATTAGGTTTAAGTTTGGGTTGATC 642
Query 630 AACTCATGG-GCCGTT-AAGCCCAAGTTTAAGTGTC-ATCTCAAGGTTCCGT-TGAATAC 685
|| || ||| | ||| ||||||||| | ||||| | ||||||||||||| | | |||
Sbjct 643 AAGTCGTGGAG--GTTCAAGCCCAAGATCAAGTG-CGATCTCAAGGTTCC-TCT---TAC 695
Query 686 CTCTAGTTCAGC-A-CGAGGATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTTTGA 743
||||| |||| | | || || ||| ||||| || |||||||| |||||||| |||||
Sbjct 696 CTCTAATTCAACCAGCG-GG-TTTGTTTTTCAGCCGACCAAGTGTGACGTTGACTTTTGA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5