BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934167
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 913 0.0
> AT2G35480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G32260.1);
Has 47 Blast hits to 47 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14910410-14912048
FORWARD LENGTH=987
Length=987
Score = 913 bits (494), Expect = 0.0
Identities = 593/641 (93%), Gaps = 6/641 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAGAAAGTTGTAGAAAGTAATGGTGTTGTGGGAGTTAGCTCTAGGAACAGC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 AAGACGAAGAAGAAAGTTGTAGAAAGTAATGGTGTTGTGGGAGTTAGCTCTAGGAACAGC 152
Query 61 CTACTTCTTGGGGCTTAGGCGGACTTACCGGCTCGCATTGAAGACCCAGCGTCGGATTGT 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 153 TTACTTCTTGGGGATTAGGCGGACTTACCGGCTCGCATTGAAGACCCAGCGTCGGCTTGT 212
Query 121 CAGTGCTAAGTATCCAAGGATCCGAAATTTTATGCATCGGAGGACTCATCAAATCTTTGA 180
|| ||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 213 TAGCCCTAAGCATCCAAGGATTCGAGATTTTATGCATCGGAGGACTTATCAAATCTTTGA 272
Query 181 TATGGCACTTAGGGTCCACAAGAATATACAACAGAGAGACATGGAAATTGGTCGGAGTCT 240
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||
Sbjct 273 TATGGCACTTAGGGTCCACAAGAACATACAACAGAGAGACATGGTTATTGGTCGGAATCT 332
Query 241 AGGAAACTGGATTCTCCGGGGGCTTGATCGGATGAAGCCAGCGGCTCAGGTTCTACTACC 300
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 333 TGGAAACTGGATTCTCCGGGGGCTTGACCGGATGAAGCCATCGGCTCAGGTTCTACTACC 392
Query 301 AAA-ACATACAGAGCCAAGCATAGACAAGGC-AACAAGGGTTTTAGAATCAACCCGACTC 358
||| | ||||||||||||||||||||||||| || ||| || ||| |||||||||| ||
Sbjct 393 AAAGA-ATACAGAGCCAAGCATAGACAAGGCGAA-AAGAGTATTACAATCAACCCGTCTT 450
Query 359 AAACCGCATGTTAACACGCAGACTCCTCAGAACCATGAGGTCGATAGGCACTTGTTCTTG 418
||||| |||||||||||||||||||||||||||| |||||| |||||| |||||||| ||
Sbjct 451 AAACCACATGTTAACACGCAGACTCCTCAGAACCGTGAGGTTGATAGGAACTTGTTCATG 510
Query 419 TCCTTGAGGAACTTTCGGTCCAAATTCCCCACTGCCTCGATGATGATGATCAAGCCACCA 478
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || |||
Sbjct 511 TCCTTGAGGAACTTTCGGTCCAAATACCCCATTGCTTCGATGATGATGATCAAACCTCCA 570
Query 479 AGACCCATCGGG-ACTACCACTCAGTATAGGCCTTACACTGCTGGTGAATCCAGTCTGAT 537
||| ||| |||| ||||| |||||||| |||||||||| || ||||||||||||||||||
Sbjct 571 AGATCCA-CGGGAACTACTACTCAGTACAGGCCTTACAGTGTTGGTGAATCCAGTCTGAT 629
Query 538 TAAACCGATTTATGCTAGAGGCGAGTTCAACAGCGTCATCAGGAAGGACATTTTGCAGTG 597
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 630 TAAACCAATTTATGCTAGAGGCGGGTTCAACAGCGTCATCAGGAAGGACATTTTGCAGTG 689
Query 598 GATGGTGCAGAAGAGATAAAGCCACCAATATTCATCAAAGG 638
||||||||||||||||||||||| |||| ||||||||||||
Sbjct 690 GATGGTGCAGAAGAGATAAAGCCGCCAAAATTCATCAAAGG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5