BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934168
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35490.1 | Symbols: | Plastid-lipid associated protein PAP ... 1652 0.0
> AT2G35490.1 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr2:14912144-14913877 REVERSE
LENGTH=1376
Length=1376
Score = 1652 bits (894), Expect = 0.0
Identities = 1083/1173 (92%), Gaps = 17/1173 (1%)
Strand=Plus/Plus
Query 8 ACACAGAGATCTGCCATGGTTACGCTCTTCACC-AC-CTC-TCGTGCTTCCCTCCTCT-T 63
||||| ||||| ||||||| ||||||||||||| | ||| || | |||| ||||||| |
Sbjct 66 ACACAAAGATCGGCCATGGCTACGCTCTTCACCGTCGCTCGTCCTTCTTCACTCCTCTAT 125
Query 64 CGCTTCCTCTGTAAA-CACAAGCAAGAGCTTCTCTCCTTCTATCTCCCTAAAACCCAATT 122
| |||||| |||| | ||||||||| |||||||||||||||||||||||||| || |
Sbjct 126 -GTTTCCTCCATAAATC-CAAGCAAGACCTTCTCTCCTTCTATCTCCCTAAAACTTAACT 183
Query 123 CTCTCTCTTTCTCTTTTGGTCATCGTCCC-AGACCACTCCGGTTTTCTAAAATCCGATCT 181
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 184 CTCTCTCTTTCTCTTTTGGTTATCGTCCCAAG-CCACTCCGGTTTTCTAAAATCCGATCT 242
Query 182 TCTCTGCCCTCGGAGTCCGAATCCGAATCCGACCTAGATGCGTCT-AATGTTACAGATGA 240
|||||||||||||| || ||||| ||||||||||||||||||||| | |||||||||||
Sbjct 243 TCTCTGCCCTCGGAATCTGAATCGGAATCCGACCTAGATGCGTCTGCA-GTTACAGATGA 301
Query 241 ATGGGGTGAGAAACCTGGAGATGCAAGTGAGCCCCAATCTCAGCCGGAT-ATTTCTCTGG 299
|||||||||||||||||||||||||| ||||||| | |||||||| ||| || | | |
Sbjct 302 ATGGGGTGAGAAACCTGGAGATGCAAATGAGCCCGACTCTCAGCCAGATAATGTGAC-CG 360
Query 300 TGAATGTGACTACGGACGAATGGGGAGAGAAATCTGGACCCGAATC-TGAGGAATCCGGG 358
||||||||| ||||||||||||||| |||||||| ||||||||| | |||||||||||||
Sbjct 361 TGAATGTGATTACGGACGAATGGGGCGAGAAATCCGGACCCGAA-CTTGAGGAATCCGGG 419
Query 359 ACCCGGTTTACGGAATCGGATCCTCCAAGGAACGAGGACGAGT-GGGAGGAAGAAATTGG 417
|||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 420 ACCCGGTTTATGGAATCGGATCCTCCAAGGAACGAAGACGAGTGGGGAGG-AGAAATTGG 478
Query 418 AAAAGAAGTTGAAATCGACGCCGGAAATGGAAGTGCGGTGTCTGACCCGACTTGGGAGCT 477
| |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGGAGAAACTGAAGCCGACGCTGGAAATGGAAGTGCGGTGTCTGACCCGACTTGGGAGCT 538
Query 478 GAAAAGGTGTTTGGCGGATTCTGTGTACGGAACTGAATTAGGTTTCCGGGCTGGCTCAGA 537
||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 539 GAAAAGGTGTTTGGCGGATTCGGTGTACGGAACTGAATTAGGTTTCAAAGCTGGGTCAGA 598
Query 538 TGTTCGAGCGGAGGTGTTAGAGCTTGTGAATCAATTGGAAGCTCTGAATCCTACGCCGGC 597
|| ||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 599 AGTCCGAGCGGAGGTTTTGGAGCTTGTGAATCAACTGGAAGCTCTGAATCCTACTCCGGC 658
Query 598 TCCGGTAGAGAATCCGGAGCTTCTCGACGGCAACTGGGTTTTGCTGTACACTGCTTTCTC 657
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCCGTTAGAGAATCCAGAACTTCTCGACGGCAACTGGGTTTTGCTGTACACTGCTTTCTC 718
Query 658 TGAGTTGATTCCTCTACTAGCTGCGGGTTCGACACCTTTGTTGAAAGTGAAAAGCATAAG 717
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TGAGTTGATTCCTCTACTAGCTGCGGGTTCGACACCTTTGTTGAAAGTTAAAAGCATAAG 778
Query 718 TCAGTCGATAGACACAAACAATCTCACTATCGACAACTCCACTACACTCTCCAGCCCTTT 777
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 TCAGTCAATAGACACAAACAATCTCATTATCGACAACTCCACTACACTCTCCAGCCCTTT 838
Query 778 TGCAGACTTCTCATTCAGTGCTACTGCTTCATTTGAAGTTCGAAGCCCTTCAAGAATTGA 837
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGCAGACTTCTCCTTCAGTGCTACTGCTTCATTTGAAGTTCGAAGCCCTTCAAGAATTGA 898
Query 838 GGTTTCTTTCAAAGAAGGTACGCTAAAACCCCCGGAGATCAAATCAAGTGTTGATCTCCC 897
|||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 899 GGTTTCTTTCAAAGAAGGCACGCTAAAACCCCCGGTGATCAAATCAAGTGTAGATCTCCC 958
Query 898 AGAGAGTGTGGGCGTCTTTGGGCAGCAGATTAGCCTTTCGTTATTGAAGCAATCTTTGAA 957
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 959 AGAGAGTGTGGGCGTCTTTGGGCAGCAGATTAGCCTTTCGTTGTTAAAGCAGTCTTTGAA 1018
Query 958 CCCTTTACAAGATGTGGCAGCAAACATTTCACGGGGACTCTCTGGTCAGCCACCTCTTAA 1017
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1019 CCCCTTACAAGATGTGGCAGCAAACATTTCACGGGCACTCTCTGGTCAGCCACCTCTCAA 1078
Query 1018 GCTTCCGTTTCCAGGAAACCGAGGCAGCTCTTGGCTCTTGACCACTTATCTCGACAAGGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCTTCCGTTTCCAGGAAACCGAGGCAGCTCTTGGCTCTTGACCACTTATCTCGACAAGGA 1138
Query 1078 TCTCAGGATTTCAAGAGGAGACGGTGGGCTTTTCGTACTTGCCAGAGAAGGAAGCTCTCT 1137
|||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1139 TCTCAGGATTTCTAGAGGAGATGGTGGCCTTTTCGTGCTTGCCAGAGAAGGAAGCTCTCT 1198
Query 1138 GCTTGAGCTCTGATATATTTGAGAAGGTATATA 1170
||||||||||||| |||||||| || |||||||
Sbjct 1199 GCTTGAGCTCTGAAATATTTGATAAAGTATATA 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5