BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934177
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35600.1 | Symbols: ATBRXL1, BRXL1 | BREVIS RADIX-like 1 | c... 1694 0.0
> AT2G35600.1 | Symbols: ATBRXL1, BRXL1 | BREVIS RADIX-like 1 |
chr2:14940845-14945357 REVERSE LENGTH=1619
Length=1619
Score = 1694 bits (917), Expect = 0.0
Identities = 997/1035 (96%), Gaps = 8/1035 (1%)
Strand=Plus/Plus
Query 1 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGTAC-AAAGATGGCAGACAGA 59
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 357 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGCACTAAA-ATGGCAGACAGA 415
Query 60 GGT---GAGGATGAAGAAGACGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 116
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGTGAGGAGGATGAAGAAGATGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 475
Query 117 GTTAAAAGCCTAACTACACAGATCAAAGACATGGCGTCGAAATTCTCAGGTACTCATAAA 176
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 476 GTTAAAAGCCTAACTACACAGATCAAAGATATGGCGTCGAAATTCTCAGGTTCTCATAAA 535
Query 177 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTCCCGGATTTTGAC 236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTTCCGGATTTTGAC 595
Query 237 ACTGCATCAGAAAGTGTTCCATACCCTTATCCGGGTGGAAGCACGAGTTCCACTCCGGCT 296
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 596 ACTGCATCAGAGAGTGTTCCATACCCTTATCCTGGTGGAAGCACGAGCTCCACTCCTGCT 655
Query 297 TGGGACTTACCAAGATCCTCATACCATCAATCTGGACGGCCAGACTCAAGATTTC-CATC 355
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 656 TGGGACTTACCAAGATCCTCCTACCATCAATCTGGACGGCCAGACTCAAGA-TTCACATC 714
Query 356 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAAGA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAGGA 774
Query 416 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCCGGTGTTCATATCACATTCGTCTC 475
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 775 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCTGGTGTTCATATCACATTTGTCTC 834
Query 476 ACTTCCCACTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAAGTTTTCGACAA 535
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 ACTTCCCAGTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAGGTTTTCGACAA 894
Query 536 GTGGCAGGCTCAAAGATGGTGGGGTGAGAACTACGACAGAATTGTTGAGCTTTACAATGT 595
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 895 GTGGCAGGCTCAGAGGTGGTGGGGTGAGAACTATGACAGAATAGTTGAGCTTTACAATGT 954
Query 596 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTATATCCGAGGACCAGTCGCAGAG 655
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGTCGCAGAG 1014
Query 656 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 1074
Query 716 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCACATCACTTTTATGGACCTCCAATGGA 775
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1075 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCTCATCATTTTTATGGACCTCCAATGGA 1134
Query 776 CGCAGCAAGAATCACCACCTCATCGAGGGACGACCCGCCTTCCATGAGTAATGCTAGTGA 835
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1135 CGCAGCAAGAATCACCACCTCATCGAGGGACGAACCGCCTTCAATGAGTAATGCTAGTGA 1194
Query 836 AATGCAAGCTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 895
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AATGCAAGGTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 1254
Query 896 ACCCGATGGAACCAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 955
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACCAGATGGAACTAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 1314
Query 956 GCATGCCAAGACATGGTGGGAGCAGAACAGAGATAGAATACAAACCCAATATCTCTAAGA 1015
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1315 GCATGCCAAGACATGGTGGGAGCAGAACAGGGACAGAATACAAACCCAATACCTCTAAGA 1374
Query 1016 GGACAAAAAA-GAGA 1029
|||||||||| ||||
Sbjct 1375 GGACAAAAAACGAGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5