BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934179
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35610.1 | Symbols: XEG113 | xyloglucanase 113 | chr2:149473... 3134 0.0
> AT2G35610.1 | Symbols: XEG113 | xyloglucanase 113 | chr2:14947365-14951247
REVERSE LENGTH=2328
Length=2328
Score = 3134 bits (1697), Expect = 0.0
Identities = 1888/1979 (95%), Gaps = 18/1979 (1%)
Strand=Plus/Plus
Query 3 AGATTG-AA-ATTGAAAATAATGGTGGAGGGTTGGAGAAATGGGTTTCGCGAGGCTACGA 60
|||||| || ||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 122 AGATTGAAACATTGAGAATAATGGTGGAGGGTTGGCGAAATGGGTTTCGCGATGCTACGA 181
Query 61 ATTCGAAACCTCTGTTCGTGACGATCTACGCGACGGTGATCATTGGCGTTCTCGTCTCCT 120
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 182 ATTCGAAACCTCTCTTCGTGACGATCTACGCGACTGTGATCATTGGCGTTCTCGTCTCTT 241
Query 121 CTTTCTATGTCTTCTCCGCCATTTACTCTCCCACCAACGGCTCCTCCTCCTTTCTCTCTT 180
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 CCTTCTATGTATTCTCCGCCATTTACTCTCCCACCAATGGCTCCTCCTCCTTTCTCTCTT 301
Query 181 TTCCTCCTCTATCCACTGCCGGCCGAATTCACCGCCTTCCACAAGATAATGCAACCTTAG 240
|||||||||| |||||| | ||||||||||| | || |||||||| |||||||||||||
Sbjct 302 TTCCTCCTCTTTCCACTTCTGGCCGAATTCATAGTCTCCCACAAGAAAATGCAACCTTAG 361
Query 241 AGTTACCTGTTGCT---CCACCACCACCACAGGCACTGCCACCGCCAGTTCTAGAGGAGG 297
||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 362 AGTTACCAGTTGCTCCACCACCACCACCACAAGCACTGCCACCGCCAGTTCTGGAGGAGG 421
Query 298 CTCAAGGAAAATCCTTGGGTAAAATTTGGGTGTCTCCTCCTCGGGACAAGAAGATGCCAC 357
||||||| || |||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 422 CTCAAGGCAATTCCTTGGGTAAAATTTGGGTGTCTCCTCCTAGAGATAAGAAGATGCCAC 481
Query 358 CGCTTGAAACCTTTAAACTGACCAAAGAATTGTTTGGGGAAAGAGTGAAGGACAATGTCA 417
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 482 CGCTTGAGACCTTTAAACTGACCAAAGAATTGTTTGGGGAAAGAGTGAAGGACAATGTTA 541
Query 418 TTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATCTTGACTTGGGTTAAACACT 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 542 TTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACT 601
Query 478 TGACTGATTTAGATCTCTCCAATATTCTTGTTGGTGCGATGGATACAAAGTTATTAGAGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGACTGATTTAGATCTCTCCAATATTCTTGTTGGTGCGATGGATACAAAGTTATTAGAGG 661
Query 538 CTTTGTACTGGAAAGGCGTTCCGGTTTTTGATATGGGAAGCCATATGAGCACAGTGGATG 597
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 662 CTTTGTACTGGAAAGGCGTTCCAGTTTTTGACATGGGAAGCCATATGAGCACAGTGGATG 721
Query 598 TCGGTTGGGGGTCTCCAACATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATT 657
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCGGGTGGGGTTCTCCAACATTCCACAAAATGGGAAGAGAAAAAGTTATTCTCATAGATT 781
Query 658 CTGTCTTGCCTTTCGGTTACGAGCTACTAATGTGTGACACTGACATGGTGTGGCTTAAGA 717
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 CTGTCTTGCCTTTTGGTTACGAGCTACTTATGTGTGACACTGACATGGTGTGGCTTAAGA 841
Query 718 ATCCTATGCCTTATTTGGCTCGATACCCAGATGCTGATGTTTTGACATCAAGCGATCAAG 777
| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 842 ACCCTATGCCTTATTTGGCTCGATTCCCAGATGCTGATGTTTTGACTTCAAGCGATCAAG 901
Query 778 TTGTGCCTACTGTCATAGATGACAGTTTGGACATAT--------GTTGGTGCTGCCTACA 829
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 902 TTGTGCCTACCGTCATAGATGACAGTTTGGACATATGGCAACAAGTTGGTGCTGCCTACA 961
Query 830 ACATAGG-ATTTTCCATTGGCGGCCGACAGAATCTGCCAAAAAGTTGGCAAAAGAATGGA 888
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 962 ACATAGGAATTTTTCATTGGCGGCCGACAGAATCTGCGAAAAAGTTGGCAAAAGAATGGA 1021
Query 889 AAGAAATTCTCTTAGCGGACGATAAGGTTTGGGATCAAAATGGGTTCAATGAGATTGTTA 948
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AAGAAATTCTCTTAGCTGACGATAAGGTTTGGGATCAAAATGGGTTCAATGAGATTGTTA 1081
Query 949 GGAGACAGCTAGGTCCATCTGTGGATGGGGATAGTGGACTTTTCTATGCTTATGATGGAA 1008
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1082 GGAGACAGCTAGGTCCATCTGTGGAAGGGGATAGTGGACTTTTCTATGCTTATGATGGAA 1141
Query 1009 ATCTCAAGGTTGGAATTTTGCCCGCTAGCATATTTTGCAGTGGCCATACTTATTTTGTTC 1068
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1142 ATCTCAAGGTTGGAATTTTGCCAGCTAGCATATTTTGCAGTGGTCATACTTATTTTGTTC 1201
Query 1069 AGGCTATGTATCAACAACTGAGGCTAGAACCATATGCCGTGCATACAACATTCCAATATG 1128
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1202 AGGCTATGTATCAACAACTCAGGCTAGAACCATATGCCGTGCATACAACATTCCAGTATG 1261
Query 1129 CAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CAGGTACCGAAGGAAAACGCCACAGGCTTCGAGAGGGGATGGTTTTCTATGACCCACCAG 1321
Query 1189 AATATTATGATTCACCAGGAGGTTTCATTGCGTTTAAACCATCTATTCCAAAGAGCTTGT 1248
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1322 AATATTATGATTCACCAGGAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGT 1381
Query 1249 TACTTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAATGAAAC 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TACTTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAATGAAAC 1441
Query 1309 AGATCAGATCAGCTCTAGCCATTGCGTCTCTTCTTAATCGTACATTGGTGATGCCACCAA 1368
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1442 AGATCAGATCAGCTCTAGCCATTGCATCTCTTCTTAATCGTACACTGGTGATGCCACCAA 1501
Query 1369 TATGGTGCAGGTTAGATAGGCTTTGGTTTGGGCATCCCGGTACTCTTCAGGGATCTATGA 1428
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1502 TATGGTGCAGGTTAGATAGGCTTTGGTTTGGGCATCCTGGTACTCTTCAGGGATCTATGA 1561
Query 1429 CCCAACAACCTTTCATCTGCCCGCTTGATCATGTCTTTGAGGTCAATATCATGCTAAAGG 1488
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1562 CCCGACAACCTTTCATCTGCCCACTTGATCATGTCTTTGAGGTCAATATCATGCTTAAGG 1621
Query 1489 AGCTACCAGAGGAAGAGTTTGGCCCTGGGATTGGTATCAGAGAATATTCTTTTCTAGATA 1548
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1622 AGCTACCAGAGGAAGAGTTTGGCCCTGGGATTGGTATCAGAGAGTATTCTTTTCTAGATA 1681
Query 1549 ACCCA--GCATTGCCGAAACAAGTAAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGA 1606
||||| || | ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1682 ACCCATTGC-T-GCCAAAACAAGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGA 1739
Query 1607 AGGAAAAGAAGGATGTGAGCCATCGAATAACACAAGCCCCTCTCAGGTTCTTAAGTTCCC 1666
||||||||||||||| ||| |||| |||||||| |||||||||| |||||||||||||||
Sbjct 1740 AGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCC 1799
Query 1667 AAAGCGGAGCAATGAAGATACGTTTAAGGCGATATTTTCTTCCTTCGAAAATGTCAAAGT 1726
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1800 AAAGCGGAGCAATGAAGATACGTTTAAGGCGATATTCTCTTCCTTCGACGATGTCAAAGT 1859
Query 1727 GATCAAGTTTTCTTCAATTGAAGATGCTTTCATCGGATTCTCTGACAAGGAGCGAGAAGA 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GATCAAGTTTTCTTCAATTGAAGATGCTTTCATCGGATTCTCTGACAAGGAGCGAGAAGA 1919
Query 1787 GAGATTTAGAAGACGGGTAAAGAGATATGTGGGAATATGGTGTTGTGAGGAGAACAAGAC 1846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 AAGATTTAGAAGACGGGTAAAGAGATATGTGGGAATATGGTGTTGTGAGGAGAACAAGAC 1979
Query 1847 TCCGGGACACATTTACTACGATATGTATTGGGACGAGAAACCTGGTTGGAAACCGGTTCC 1906
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 TCCAGGACACATTTACTACGATATGTATTGGGACGAGAAACCTGGTTGGAAACCGGTTCC 2039
Query 1907 TCCGCAGACACCAGAAGAAGATCATCCTCCTCTCTGATAACATAACCGATAAGAAGACT 1965
|| ||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 2040 ACCACAGACACCAGAAGAAGATCATCCTCCTCTCTGATAACATTACTGGCAAGAAGACT 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5