BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934180

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35612.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   433    5e-121


> AT2G35612.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis 
thaliana protein match is: Copper amine oxidase family protein 
(TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins 
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 
974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes 
- 9610 (source: NCBI BLink). | chr2:14955241-14955501 REVERSE 
LENGTH=261
Length=261

 Score =  433 bits (234),  Expect = 5e-121
 Identities = 252/261 (97%), Gaps = 0/261 (0%)
 Strand=Plus/Plus

Query  21   ATGGTGTCTCGTGGTTGTTCAATCACAGTTTTGTTTCGCTTTCTTATAGTTCTTTTGGTG  80
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTCTCGCGGTTGTTCAATCACAGTTTTGTTTCGCTTTCTTATAGTTCTTTTGGTG  60

Query  81   ATACAAGTACACTTTGAGACTACAACAGCAGCTCGACATGCGCCGGTTGTTTCCTGGTCA  140
            ||||||||||||||||||| ||||| ||||||||||||||| || |||||||| ||||||
Sbjct  61   ATACAAGTACACTTTGAGAATACAAAAGCAGCTCGACATGCACCAGTTGTTTCGTGGTCA  120

Query  141  CCACCTGAGCCGCCTAAGGATGATTTTGTGTGGTACCACAAGATCAACCGCTTCAAGAAC  200
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  CCACCTGAGCCGCCTAAGGATGATTTTGTGTGGTACCACAAGATCAACCGCTTCAAAAAC  180

Query  201  ATAGAACAAGATGCATTCCGACCAACCCACCAAGGTCCTAGTCAAGGTATCGGACACAAG  260
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  181  ATAGAACAAGATGCATTCCGACCAACCCACCAAGGTCCTAGTCAAGGTATTGGACACAAA  240

Query  261  AACCCTCCAGGTGCTCCTTAA  281
            |||||||||||||||||||||
Sbjct  241  AACCCTCCAGGTGCTCCTTAA  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5