BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934181
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleo... 455 5e-127
> AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide
exchange factor 14 | chr1:11326301-11330738 REVERSE LENGTH=2255
Length=2255
Score = 455 bits (246), Expect = 5e-127
Identities = 409/486 (84%), Gaps = 18/486 (4%)
Strand=Plus/Plus
Query 236 ACATTTAT-ATGGTAAGGAGAAACGTGGCTA--TGCACTCTGCTTTTCTGACGTTGAAGT 292
|||||| | ||| ||||||||||| || || || ||| | | ||| || || ||||
Sbjct 711 ACATTT-TGATGCTAAGGAGAAACCAGGGTATGTGTACTGT-CATTT-GGATGTGGAAG- 766
Query 293 C-ATGAAGGAGAGATTTTCAAAGCTATTTCTCGGTGAAGATGTTAC-GGGAGGATGCAAC 350
| |||||||||| |||||| ||| |||| ||||| |||||||| || ||| ||||| ||
Sbjct 767 CTATGAAGGAGAAATTTTCTAAGTTATTGCTCGGCGAAGATGTCACTGGG-GGATGTAAG 825
Query 351 GGTGTGCAAACCGCTTTGGCTTTATCAAACGCTATAACTCATCTTGCTACCTCGGTTTTT 410
||||| ||| ||||||||||| ||||| ||| |||| ||||||||||| ||| |||||
Sbjct 826 GGTGTCCAAGTAGCTTTGGCTTTGTCAAATGCTGTAACACATCTTGCTACGTCGATTTTT 885
Query 411 GGCGAGCTCTGGAAGTTGGAACCATTGTGTGAAGACAA-AAAGCAGAGATGGAGAACGGA 469
|||||||||||||| |||||||| ||||||||||| || ||| |||| |||||||| |||
Sbjct 886 GGCGAGCTCTGGAAATTGGAACCTTTGTGTGAAGAGAAGAAA-CAGAAATGGAGAAGGGA 944
Query 470 AATGGATTGGTTACTCTCTCCAACTAACTACATGATTGAGTTAGTCCCATCTAAGCAAGA 529
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 945 AATGGATTGGCTACTTTCTCCAACTAACTACATGATTGAGTTAGTCCCTTCTAAGCAAAA 1004
Query 530 TGGCGAAAACGGAAGATCACTTGAGATAATGACGCCGAAAGCCCGTGCAGACATTCATAT 589
|| | || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1005 TGATGCCAATGGAAGATCACTTGAGATAATGACTCCGAAAGCCCGCGCAGACATTCATAT 1064
Query 590 GAATATACCAGCTCTCCGGAAATTGGACTCCATGCTAATTGAGACACTGGACTCTGTGGT 649
|||| | |||||||| | ||| |||||||| |||||||||||||||||||| ||| ||||
Sbjct 1065 GAATCTCCCAGCTCTTCAGAAGTTGGACTCAATGCTAATTGAGACACTGGATTCTATGGT 1124
Query 650 AAACACAGAGTTTTGGTATTCAGA-AGTGGGTCACAAG-GCAGA-GGGAAAGAACAAGAT 706
|||||||||||||||||||| || | ||| | | || || || ||||| ||||||||
Sbjct 1125 GAACACAGAGTTTTGGTATTCTGAGATTGG-T-AGTAGAGCTGAAGGGAA-GAACAAGAG 1181
Query 707 TACAAG 712
||||||
Sbjct 1182 TACAAG 1187
Score = 139 bits (75), Expect = 6e-32
Identities = 145/178 (81%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 17 AATAATGACTTATGATGGCTTAGAAACTTATATCATCAACAATCAATCTTTA-GAAGAAG 75
||| || || ||| ||||||| ||||||| ||| ||||| |||||||| || |||||||
Sbjct 435 AATGATTACATATTATGGCTTGGAAACTTGTATTATCAATAATCAATC-ATATGAAGAAG 493
Query 76 AAAGTGGAACAAGCCGCGGAGAT-GAGTACCCGA-ATGATTCATTGGATGATGATTCATT 133
| ||||||||||| || |||||| || | | | | ||||| || ||||||||| ||||
Sbjct 494 AGAGTGGAACAAGTCGAGGAGATGGA-TGTCTTACA-GATTCGTTAGATGATGATGCATT 551
Query 134 TTCAAGCTGTTCATCAAGCAAAGATGTGCTCGAG-TCATTTTCCTCAAAATTGTTACC 190
|||||||||||||||||||||||||| ||| || || ||||| || |||| ||||||
Sbjct 552 TTCAAGCTGTTCATCAAGCAAAGATGC-CTCTAGCTCTTTTTCTTCGAAATGGTTACC 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5