BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934182
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35615.1 | Symbols: | Eukaryotic aspartyl protease family p... 1923 0.0
> AT2G35615.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:14959391-14960734 FORWARD LENGTH=1344
Length=1344
Score = 1923 bits (1041), Expect = 0.0
Identities = 1250/1351 (93%), Gaps = 14/1351 (1%)
Strand=Plus/Plus
Query 21 ATGGCAACCCAAAttcttctctgtttcttcctcttcttctc-gtcgactctctcttcatc 79
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGGCAACCCAAATTCTTCTCTGTTTCTTCCTCTTCTTCTCGGT-GACTCTCTCTTCATC 59
Query 80 gtctcACCCTAAAAACTTGAGTGTTGAGCTGATCCACCGTGACTCTCCCCTTTCCCCACT 139
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 GGGTCACCCAAAAAACTTCAGTGTTGAGCTGATCCACCGTGACTCTCCCCTTTCCCCAAT 119
Query 140 TTACAACCCAAAAAACACTGTCACTGACCGCCTTAACGCTGCTTTCCTCCGCTCCA-TCT 198
||||||||| ||| ||| |||||||| ||||| ||||||||||||||||||| || |||
Sbjct 120 CTACAACCCACAAATCACCGTCACTGATCGCCTCAACGCTGCTTTCCTCCGCT-CAGTCT 178
Query 199 CTCGTTCCCGCCGCCTCAA-CAACATTTTATCTCAAACCGATCTCCAATCCGGTTTAATC 257
|||||||||||||| |||| || || |||| |||||||||||||||||||||||||||
Sbjct 179 CTCGTTCCCGCCGCTTCAACCACCA-ACTATCCCAAACCGATCTCCAATCCGGTTTAATC 237
Query 258 GGAGCAGATGGCGAGTTCTTCATGAGTATCACCATTGGTACTCCACCAATGAAGGTCTTT 317
|||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 238 GGAGCAGACGGCGAGTTTTTCATGAGTATCACCATCGGTACTCCACCAATAAAGGTTTTT 297
Query 318 GCCATCGCTGACACAGGAAGTGACCTAACCTGGGTCCAATGCAAACCTTGTCAACAATGC 377
|| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 298 GCGATCGCTGACACAGGAAGTGACCTAACTTGGGTCCAATGTAAGCCTTGTCAACAATGT 357
Query 378 TACAAAGAAAACGGTCCAATCTTCGACAAGAAGAAATCCTCTACTTACAAGAGCGAGCCT 437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 TACAAAGAAAACGGTCCAATCTTCGACAAGAAGAAATCCTCTACTTATAAGAGCGAGCCT 417
Query 438 TGTGACTCACGTAACTGCCACGCCTTGTCGAGTAGC-GAACGTGGATGCGACGAATCCAA 496
|||||||||||||||||||| |||||||| |||| | ||||| |||||||| ||||||||
Sbjct 418 TGTGACTCACGTAACTGCCAGGCCTTGTCCAGTA-CGGAACGGGGATGCGATGAATCCAA 476
Query 497 AAATGTATGCAAGTACCGTTACTCGTACGGTGACCAGTCGTTCAGCAAAGGAGACGTTGC 556
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 477 CAATATATGCAAGTACCGTTACTCTTACGGTGATCAGTCGTTCAGCAAAGGAGACGTTGC 536
Query 557 CACGGAAACCATCTCTATCGACTCTGCTTCAGGGTCCCCTGTTTCTTTCCCTGGTACCGT 616
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 537 CACGGAAACTGTCTCTATTGACTCTGCTTCAGGGTCCCCTGTTTCTTTTCCTGGTACTGT 596
Query 617 TTTCGGTTGCGGCTACAATAATGGTGGTACCTTCGACGAGACTGGTTCCGGGATCATAGG 676
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 597 CTTCGGTTGTGGCTACAATAACGGTGGTACCTTCGACGAGACTGGTTCTGGGATTATCGG 656
Query 677 TCTCGGTGGTGGCCATCTATCTCTAATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATT 736
||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCTAGGTGGTGGTCATTTATCACTAATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATT 716
Query 737 CTCTTATTGCTTGTCTCACAAGTCAGCTACCACGAATGGCACAAGCGTCATAAACCTAGG 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCTTATTGCTTGTCTCACAAGTCAGCTACCACGAATGGCACAAGCGTCATAAACCTAGG 776
Query 797 CACCAACTCGATTCCTTCAAGTCTGAGCAAGGACTCCGGCGTGATATCAACTCCGTTGGT 856
||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 777 CACTAACTCGATTCCTTCAAGTCTAAGCAAAGACTCCGGCGTGGTATCAACTCCGTTGGT 836
Query 857 CGATAAAGAGCCTCGTACTTACTACTACTTGACGCTCGAAGCCATCTCCGTCGGGaaaaa 916
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 837 CGATAAAGAGCCTCTTACTTACTACTACTTGACGCTTGAAGCCATCTCCGTCGGGAAGAA 896
Query 917 aaaGATTCCGTACACCGGAAGCTCGTATAACCCAAACGACGGA-GGAAT-CTTCTCGGAG 974
||||||||| ||||||||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 897 AAAGATTCCTTACACCGGAAGCTCGTATAACCCAAACGACG-ACGGAATACT-CTCGGAG 954
Query 975 ACGTCTGGAAACATCATCATCGACTCTGGAACGACGCTGACACTCCTCGACTCAGGTTTC 1034
|| |||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||
Sbjct 955 ACATCTGGAAACATCATCATCGACTCTGGAACGACACTGACCCTCCTCGAAGCTGGTTTC 1014
Query 1035 TTTGACAAATTTGGCGCGGCGGTTGAGGAATTAGTGACCGGAGCTAAGCGCGTGAGTGAT 1094
|||||||||||| || ||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 1015 TTTGACAAATTTAGCTCGGCGGTGGAGGAATCAGTGACCGGAGCCAAGCGCGTGAGTGAT 1074
Query 1095 CCACA-GGGACTTTTGTCACACTGTTTCAAATCCGGAAGTGCAGAGATCGGTTTGCCGGA 1153
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CCACAAGGG-CTTTTGTCTCACTGTTTCAAATCCGGAAGTGCAGAGATCGGTTTGCCGGA 1133
Query 1154 GATAACGGTGCATTTCACGGGCGCCGATGTGAGACTGAGTCCGATCAACGCGTTTGTGAA 1213
||||||||||||||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct 1134 GATAACGGTGCATTTCACGGGTGCAGATGTGAGGCTGAGTCCGATCAACGCATTCGTGAA 1193
Query 1214 AGTGAGTGAAGATATGGTATGCTTGAGTATGGTTCCCACCACCGAGGTTGCCATCTATGG 1273
| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1194 ACTGAGTGAAGACATGGTTTGCTTGAGTATGGTTCCGACCACCGAGGTTGCCATCTATGG 1253
Query 1274 GAACTTTGCTCAGATGGATTTTCTTGTTGGGTATGACTTGGAGACAAGAACAGTGTCGTT 1333
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct 1254 GAACTTTGCTCAGATGGATTTCCTAGTTGGGTATGACTTGGAGACGAGGACGGTGTCGTT 1313
Query 1334 TCAACGCATGGATTGCTCTGCAAATTTGTGA 1364
||||| ||||||||||||||| |||||||||
Sbjct 1314 TCAACACATGGATTGCTCTGCGAATTTGTGA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68172340110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5