BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934194
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16720.1 | Symbols: | Ribosomal protein L23/L15e family pro... 641 0.0
AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family pro... 492 2e-138
> AT4G16720.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:9399960-9401382 REVERSE LENGTH=878
Length=878
Score = 641 bits (347), Expect = 0.0
Identities = 545/640 (85%), Gaps = 15/640 (2%)
Strand=Plus/Plus
Query 5 TGCGTAA-CTTGGAGAAATGGGTGCGTACAAGTATGTCTCGGAGCTATGGAGGAAGAAGC 63
|||| || ||| || |||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 53 TGCG-AATCTTCGA-AAATGGGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAAC 110
Query 64 AGTCGGATGTGATGAGGCACCTGCA-ACGCGTGAGGTGTTGGGATTACAGACAACAACCT 122
|||| ||||||||||| ||| || | | || ||||| ||||| |||||||| ||||||
Sbjct 111 AGTCCGATGTGATGAGATTCCTCCAGA-GGGTTAGGTGCTGGGAGTACAGACAGCAACCT 169
Query 123 TCGATCGTTCGT-TTGACTC-GACCCACTCGTCCAGACAAAGCTCGCCGTTTGGGGTT-C 179
||||| |||||| | | || | || |||||||| || || ||||| ||||| ||||| |
Sbjct 170 TCGATTGTTCGTCTCG--TCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTT-GGGTTAC 226
Query 180 AAGGCGAAGCAGGGATATGTGGTGTACAGAGTGCGAGTGAGACGAGGTGGAAGGAAGAGG 239
||||| |||||||| | ||| |||||| | || || |||||||| |||||| | ||||||
Sbjct 227 AAGGCCAAGCAGGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGG 286
Query 240 CCAGTTCCTAAGGGTATTGTGTATGGTAAGCCAACGAACCAAGGAGTGACACAACTCAAG 299
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 287 CCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACACAACTCAAG 346
Query 300 TTCCAACGAAGCAAGAGGTCTGTTGCGGAGGAGCGAGCTGGGAGGAAGCTTAG-TGGTTT 358
||||| || |||||| | |||||||| |||||||| ||||| ||||| || | |||| |
Sbjct 347 TTCCAGCGTAGCAAGCGTTCTGTTGCTGAGGAGCGTGCTGGCAGGAAA-TTGGGTGGTCT 405
Query 359 GAGAGTTGTCAACTCCTACTGGATCAACGAGGATTCGACTTACAAGTACTACGAGATCAT 418
|||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 406 CAGAGTTGTCAACTCTTACTGGCTCAATGAGGATTCGACCTACAAGTACTACGAGATCAT 465
Query 419 TCTTG-TGGATCCGGCTCATAACGCAGTGCGTAATGACCCGAGAATCAACTGGATTTGTA 477
|||| | || || || || || || ||||||||||||||||||||||||||||| || |
Sbjct 466 -CTTGGTTGACCCAGCACACAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCA 524
Query 478 ACCCTGTTCACAAGCACCGTGAGCTCAGAGGTCTCACATCAGAAGGAAAGAAGAACAGAG 537
|||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 525 ACCCAGTTCACAAGCACCGTGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAG 584
Query 538 GTTTGCGTGGAAAGGGTCATAACAACCACAAGAATCGACCATCACGTAGAGCTACTTGGA 597
|| | || ||||||||||| |||||||||||||| || ||||| || || ||||| ||||
Sbjct 585 GTCTCCGCGGAAAGGGTCACAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGA 644
Query 598 AGAAAAACAACACTCTCTCCCTCCTTCGTTACCGTTGATT 637
||||||||||| ||||| ||| | |||||||||||||||
Sbjct 645 AGAAAAACAACTCTCTCAGCCTTCGTCGTTACCGTTGATT 684
> AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:9714092-9715612 REVERSE LENGTH=997
Length=997
Score = 492 bits (266), Expect = 2e-138
Identities = 507/624 (81%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 20 AATGGGTGCGTACAAGTATGTCTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 79
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 67 AATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 126
Query 80 GCACCTGCA-ACGCGTGAGGTGTTGGGATTA-CAGACAACAACCTTCGATCGTTCGT-TT 136
| || || | | || ||||||||||| || | | || || ||||| || |||||| ||
Sbjct 127 GTTTCTTCAGAGG-GTTAGGTGTTGGGAGTATC-GCCAGCAGCCTTCCATTGTTCGTCTT 184
Query 137 GACTCGACCCACTCGTCCAGACAAAGCTCGCCGTTTGGGGTTCAAGGCGAAGCAGGGATA 196
| ||| ||||||||||| ||||| ||||| ||| | || | |||||| |||||||| |
Sbjct 185 GT-TCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGGGGTT 243
Query 197 TGTGGTGTACAGAGTGCGAGTGAGACGAGGTGGAAGGAAGAGGCCAGTTCCTAAGGGTAT 256
||| || ||| | || ||||| ||||| |||||| | ||||||||||| |||||||||||
Sbjct 244 TGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTAT 303
Query 257 TGTGTATGGTAAGCCAACGAACCAAGGAGTGACACAACTCAAGTTCCAACGAAGCAAGAG 316
||||| ||||| || || ||||| ||||||||||| ||||| ||||| || || |||||
Sbjct 304 CGTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAATTCCAGCGTAGTAAGAG 363
Query 317 GTCTGTTGCGGAGGAGCGAGCTGGGAGGAAGCTTAGTGGT-TTGAGAGTTGTCAACTCCT 375
|||||||| ||||| || ||||| | || || | || || || ||||| |||||||
Sbjct 364 ATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTT-AGGGTTGTTAACTCCT 422
Query 376 ACTGGATCAACGAGGATTCGACTTACAAGTACTACGAGATCATTCTTGTGGATCCGGCTC 435
||||| |||| ||||| || || ||||||||||||||||| || ||||| || || || |
Sbjct 423 ACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCAC 482
Query 436 ATAACGCAGTGCGTAATGACCCGAGAATCAACTGGATTTGTAACCCTGTTCACAAGCACC 495
| || || || || ||||| || || ||||||||||| || |||||||| |||||||||
Sbjct 483 ACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACAAGCACA 542
Query 496 GTGAGCTCAGAGGTCTCACATCAGAAGGAAAGAAGAA-CAGAGGT-TTGCGTGGAAAGGG 553
| || |||||||||||||| || |||||||||||||| | | ||| || |||||||||||
Sbjct 543 GAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATC-GTGGTCTT-CGTGGAAAGGG 600
Query 554 TCATAACAACCACAAGAATC-GACCATCACGTAGAGCTACTTGGAAGAAAAACAACACTC 612
||| |||||||||||||| | |||| || || || || || |||||||| ||||||| |
Sbjct 601 TCACAACAACCACAAGAA-CAGACCTTCCCGCAGGGCAACCTGGAAGAAGAACAACAGTA 659
Query 613 TCTCCCTCCTTCGTTACCGTTGAT 636
|||| |||| ||||||||| ||||
Sbjct 660 TCTCTCTCCGTCGTTACCGGTGAT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5