BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934205
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35790.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1184 0.0
> AT2G35790.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724);
Has 116 Blast hits to 116 proteins in 49 species: Archae
- 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). |
chr2:15040679-15042123 FORWARD LENGTH=920
Length=920
Score = 1184 bits (641), Expect = 0.0
Identities = 718/755 (95%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 8 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 103
Query 68 TCTCTCTTCCTCCACCTTCACTACAGGATATCATCATCGGTCAATAGCAGGATCATGGTC 127
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 104 TCTCTCTTCCTCCACCTTCACTTCAGGATATCATCACCGGTCAATAGCAGGATCATGG-- 161
Query 128 ATCATCATCAGTGATCCCTAAGGTCAGATTCCAGGTTCCATCCCTTAACCAGAGAAGCTG 187
||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 162 -TCATCATCAGTGAACCCGAAGGTCAGATTCCAGGTTCCATCCCTTAGCCAGAGAAGCTG 220
Query 188 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 280
Query 248 CCAAGAGAAGAAAGAAGAGAATGATGGAGGGGTGGTTTACTATGGCCCAATCTCATCCAC 307
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 281 CCAAGAGAAGAAAGAAGAGAAGGATGGAGGTGTGGTTTACTATGGACCAATCTCATCAAC 340
Query 308 CATCAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGCCTCTCAGTGTCTCTTGGCCC 367
||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 341 CATAAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGTCTATCAGTCTCTCTTGGCCC 400
Query 368 AGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 460
Query 428 CACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTCGTTAC-CCCTT 486
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 461 TACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTTGTTAGTCCCT- 519
Query 487 ACGTGCACAAGCTTAGATGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACAT 546
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 520 ACGTGCACAAGCTGAGGTGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACTT 579
Query 547 GGCTTGCCACATTTACCCCGAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 606
|||| | |||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GGCTCGGCACATTTAGCGCAAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 639
Query 607 AAAGACCGTATGTGAGCTTCAAGGCGGATGGGAATTACTACTTTGTGGACGCAGATCATT 666
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 640 AAAGACCGTATGTGAGCTTCAAGGCTGATGGGAATTTCTACTTTGTGGATGCAGATCATT 699
Query 667 GCCCCAACAAGGCATTGTTGGCCAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 726
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 700 GCCCTAACAAGGCATTGTTGGCTAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 759
Query 727 TCAAGAACTTGTAATCCAAATTCGTCTCTTT-GTT 760
||||||||||||||||||||||||| ||||| |||
Sbjct 760 TCAAGAACTTGTAATCCAAATTCGTTTCTTTTGTT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5