BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934208
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35820.1 | Symbols: | ureidoglycolate hydrolases | chr2:150... 556 6e-158
AT2G35810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 518 3e-146
> AT2G35820.1 | Symbols: | ureidoglycolate hydrolases | chr2:15050912-15052239
FORWARD LENGTH=835
Length=835
Score = 556 bits (301), Expect = 6e-158
Identities = 484/569 (85%), Gaps = 25/569 (4%)
Strand=Plus/Plus
Query 18 CAACGATGGCGAAATCTCCAGTGGAAGTGAATCTGATCCCGATCGAAGCTACTTCC-GAG 76
|||||||||||||||| || || || ||||| |||||||||||||||||||| ||| |||
Sbjct 17 CAACGATGGCGAAATCCCCGGTAGAGGTGAAACTGATCCCGATCGAAGCTAC-TCCTGAG 75
Query 77 ACCTTCGCGGACTATGGTCAAATCATCGAAGCCTCTCGTGATGGTGAAACTTTCGGTCCC 136
| ||||| |||||||||||| ||||||||||||||||||| |||| | ||||||||||
Sbjct 76 AATTTCGCAGACTATGGTCAAGTCATCGAAGCCTCTCGTGACGGTGCAGGTTTCGGTCCC 135
Query 137 AACGACGCTCAATTGGATCTCTCCAGAGGAACCCCACGGTTATATATAATGCCGGTTCA- 195
|||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |||
Sbjct 136 AACGACGCTCAACTGGATCTCTCCAGAGGAATCCCACGGTTCTATATAATG-CGGATCAG 194
Query 196 AGATACATCCTTTAG-CTTTTCCAAG-A-TCACTCATCACGCAAACGTGACACAGTGCCT 252
||||||| ||||| | ||||||| | | ||||||| ||||| | |||||||||||| ||
Sbjct 195 AGATACACCCTTT-GACTTTTCC--GTACTCACTCACCACGCGAGCGTGACACAGTGTCT 251
Query 253 AGGATCAATAGGAGCTCATGTTTGGTATGTTGGAGTGGCTAAGCCGTCTCTTGTTGAAGA 312
|||||||||||||| |||||||||||| ||||||||||||| ||| | ||| |||||||
Sbjct 252 AGGATCAATAGGAGGTCATGTTTGGTACCTTGGAGTGGCTAAACCGACACTTATTGAAGA 311
Query 313 ---TGATGA-CGAAAGGA-GAGTAGATACAGTAG-AATCAAAGTCTGGTCACTTGTACGC 366
|||||| |||| || | ||||||| | | | |||||| ||||||||||||||||||
Sbjct 312 TGGTGATGATGGAAA-GATG-GTAGATA-AATTGAAATCAAGGTCTGGTCACTTGTACGC 368
Query 367 TCCTCCTGCGGTTGAAGAGGTGCGCGTCTTCAGGGTCTCAGGAACAAAGTTTGTTAAA-T 425
||||||||||||||||||| | ||||||||||||||||| ||| |||||||| ||||| |
Sbjct 369 TCCTCCTGCGGTTGAAGAGATTCGCGTCTTCAGGGTCTCGGGACCAAAGTTTATTAAACT 428
Query 426 ACAACCGCGGTACATGGCATGTTGGACCGCTCTTCAAAGAAAGCTCCATGGACTTCTACA 485
|||| |||||| |||||||||||||| ||||||| || |||| ||||||||||||||
Sbjct 429 G-AACCACGGTACGTGGCATGTTGGACCACTCTTCAGTGACAGCTACATGGACTTCTACA 487
Query 486 ATCTTGAGCTCACGGA-CACAGATGTGGTGGAT-GAGACGACATATGATTTCAGGAAGAA 543
| |||||||||| | | |||| ||| ||||||| | |||||||||||||||| || ||
Sbjct 488 ACCTTGAGCTCA-GCAACACAAATGCGGTGGATCGC-ACGACATATGATTTCATCAAAAA 545
Query 544 TAATGGAGTCATCTTCCGATTTAAACCCA 572
||| ||||||| | ||||| || | ||||
Sbjct 546 TAAAGGAGTCACCATCCGAGTTGACCCCA 574
> AT2G35810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G35830.2);
Has 153 Blast hits to 153 proteins in 52 species: Archae -
0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 82; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15049150-15050323
FORWARD LENGTH=858
Length=858
Score = 518 bits (280), Expect = 3e-146
Identities = 472/563 (84%), Gaps = 20/563 (4%)
Strand=Plus/Plus
Query 16 GTCAACGATGGCGAAATCTCCAGTGGAAGTGAATCTGATCCCGATCGAAGCTACTTCC-G 74
||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
Sbjct 38 GTCAACGATGGCGAAATCTCCGGTGGAAGTGAATCTGATACCAATCGAAGCTAC-ACCTG 96
Query 75 AGACCTTCGCGGACTATGGTCAAATCATCGAAGCCTCTCGTGATGGTGAAACTTTCGGTC 134
|||||||||| || ||||||||| |||||||||||||||||||||| | || |||||
Sbjct 97 AGACCTTCGCAGAGTATGGTCAAGTCATCGAAGCCTCTCGTGATGGGGCCGGTTACGGTC 156
Query 135 CCAACGACGCTCAATTGGATCTCTCCAGAGGAACCCCACGGTTATATATAATGCCGGTTC 194
||||||||||||||||||||||||| | ||||| ||||||| | |||||| | || |
Sbjct 157 CCAACGACGCTCAATTGGATCTCTCTAAAGGAATCCCACGGCTCTATATACTTA-GGCTG 215
Query 195 AA-GATACATCCTTTAGC-TTTTCCAAGATCACTCATCACGCAAACGTGACACAGTGCCT 252
|| || ||| |||| || |||| ||||||||| ||||||||||| ||||||||||| ||
Sbjct 216 AAAGAAACACCCTT-AGGGTTTTTCAAGATCACGCATCACGCAAAGGTGACACAGTGTCT 274
Query 253 AGGATCAATAGGAGCTCATGTTTGGTATGTTGGAGTGGCTAAGCCGTCTCTTGTTGAAGA 312
|||||||||||||| | || |||||||| | |||||||||||||| |||||| |||||||
Sbjct 275 AGGATCAATAGGAGGTGATATTTGGTATATGGGAGTGGCTAAGCCATCTCTTATTGAAGA 334
Query 313 TGATGACGA---AAGGAGAGTAGATACAGTAGAATCAAAGTCTGGTCACTTGTACGCTCC 369
|||||| || ||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 335 TGATGATGATGGAAGGAGAGTAGATACAGTAAAAGCAAAGTCTGGTCACTTGTACATTCC 394
Query 370 TCCTGCGGTTGAAGAGGTGCGCGTCTTCAGGGTCTCAGGAACAAAGTTTGTTAAA-TACA 428
|||| ||| |||||| | |||||||||||| |||| ||| |||||||||| ||| | ||
Sbjct 395 ACCTGAGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAACTGCA 454
Query 429 ACCGCGGTACATGGCATGTTGGACCGCTC-TTCAAAGAAAGCTCCAT---GGACTTCTAC 484
||| ||||||||||||| |||||| || || | | |||||||| ||| ||||||
Sbjct 455 -CCGTGGTACATGGCATGCTGGACC-CTTGTTTAGTGGCAGCTCCATCATGGATTTCTAC 512
Query 485 AATCTT-GAGCTCACGGA-CACAGATGTGGTGGATGAGACGACATATGATTTCAGGAAGA 542
|| ||| || |||| | | |||| ||||||||||| | ||| || ||||||||| |||||
Sbjct 513 AA-CTTAGAACTCA-GCAACACAAATGTGGTGGATCACACGTCACATGATTTCACGAAGA 570
Query 543 ATAATGGAGTCATCTTCCGATTT 565
|||||||||||| |||||| |||
Sbjct 571 ATAATGGAGTCAGCTTCCGCTTT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5