BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934215
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 961 0.0
> AT2G35900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32
proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:15069997-15071653 REVERSE LENGTH=898
Length=898
Score = 961 bits (520), Expect = 0.0
Identities = 589/622 (95%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 1 TCTCATCACGAATTTTAGCTATGGGTTGGGTCTGGATTGACGATGCATCTGCCGCTAAAG 60
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||
Sbjct 94 TCTCATCACGAATTTTAGCTATGGGTTGGATCTGGATTGACGATTCATCCGCCTCTAAAG 153
Query 61 CCGGTACTGATCTCACCGATAAACCGCTCGGAGATTCCT-CCGCCGCCGCCGGAAATTGC 119
||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 154 CCGGTGCTGATCTCACCGATAAACCGCTCGGAGATT-CTGCCGCCGCCGCCGAAAATTGC 212
Query 120 TCCACCACCACGGTGGTAAGATCGCAGTGCAAGACGGAGGAGGTTGAGCCTGGAAAGTTC 179
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 213 TCCACGACCACGGTGGTAAGATCTCAGTGCAAGACGGAGGAGGTCGAGCCTGGAAAGTTC 272
Query 180 GTTAGGAAATGCGACAAAACAGAGGAGATCCTCCGCCACTGTTTTGGGAAGCCGTCTGAA 239
|| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 273 GTCAGGAAATGCGACAAAACAGAAGAAATCCTCCGCCACTGTTTTGGGAAGCCCTCTGAA 332
Query 240 GTCGTTCAATCCAACACAGAGCACACAGAAGAAGATGTGACAGACCAGATGGTAGGG-AG 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 333 GTCGTTCAATCCAACACAGAGCACACAGAAGAGGATGTGACAGACCAGATGGT-GGGAAG 391
Query 299 ATCCGCTCTTCCGAATCAGTTTGAGGA-AAGAAACCCGCTAAACTTCCCTGGACTCCGCA 357
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 392 ATCCGCTCTTCCGAATCAGTTTGAGGATAA-AAACCCGCTAAACTTCCCGGGACTCCGCA 450
Query 358 GAGATGTAGACGCCATCGAACGCCATTTCTTGAGCGGAATGAAGAATTTCTTTGATGCAG 417
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 451 GAGATGTAGACGCCATCGAACGCCATTTCTTGAGCGGAATGAAGAGTTTCTTTGATGCGG 510
Query 418 CTGAAGAGATGACAAGCAGCTTATTTGATATCATGGGAGACCATCACCCAAGCACCAGGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CTGAAGAGATGACAAGCAGCTTATTTGATATCATGGGAGACCATCACCCAAGCACCAGGA 570
Query 478 GAGGAGGGATACCCATTGAAAACCATCCTAAGGTAGAGGACCACCGCAATGACAAAACTG 537
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 571 GAGGAGGGATACCCATTGAAAACCATCCCAAGGTAGAGGAGCACCGCAATGACGAAACTG 630
Query 538 CCCCTATACGGCCACACTCCTCGGGAGAGATTGATCTCTCGGGCTTGGCCAAGGACGTTT 597
|||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 631 CCCCTACACGACCACACTCCTCTGGCGAGATTGATCTCTCGGGCTTGGCCAAGGACGTTT 690
Query 598 GAGAGAGGTCGTGTACTTCTTC 619
|||| ||||||| | |||||||
Sbjct 691 GAGAAAGGTCGTCTGCTTCTTC 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5