BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934220

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsi...   555    2e-157


> AT4G23400.1 | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic 
protein 1;5 | chr4:12220743-12222371 FORWARD LENGTH=1129
Length=1129

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 323/334 (97%), Gaps = 2/334 (1%)
 Strand=Plus/Plus

Query  95   ATGTGGTGCTGGTGTGGTTAAAGGGTTTCAACCAGGGCTATACCAGGCGAATGGCGGTGG  154
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  484  ATGTGGTGCTGGTGTGGTTAAAGGGTTTCAACCAGGGCTGTACCAGACGAATGGCGGTGG  543

Query  155  AGCTAATGTGGTGGCTCATGGTTATACAAAGGGTTCAGGTCTTGGTGCAGAGATTATTGG  214
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  544  AGCTAATGTGGTGGCTCATGGTTACACAAAGGGTTCAGGTCTTGGTGCAGAGATTGTTGG  603

Query  215  AACTTTTGTTCTGGTTTACACTGTTTTCTCAGCTACTGATGCTAAGAGAAGTGCCAGAGA  274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  604  AACTTTTGTTCTGGTTTACACTGTTTTCTCAGCTACTGATGCTAAGAGAAGTGCCAGAGA  663

Query  275  GTCTCATGTCCCTATCTTGG-TGCCGCTTCCAATTGGGTTTGCTGTCTTCTTGGTACACT  333
             ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct  664  CTCTCATGTCCCTATCTTGGCT-CCGCTTCCAATTGGGTTTGCTGTCTTCTTGGTGCACT  722

Query  334  TGGCTACCATCCCAATCACTGGAACCAGCATTAACCCGGCCAGGAGTCTCGGAGCTGCCA  393
            |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||
Sbjct  723  TGGCTACCATCCCAATTACTGGAACTGGCATTAACCCGGCCAGGAGTCTCGGAGCTGCCA  782

Query  394  TCATCTACAACAAGGATCATGCTTGGGATGACCA  427
            ||||||||||||||||||||||||||||||||||
Sbjct  783  TCATCTACAACAAGGATCATGCTTGGGATGACCA  816



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5