BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934224

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35615.1 | Symbols:  | Eukaryotic aspartyl protease family p...   429    1e-119


> AT2G35615.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr2:14959391-14960734 FORWARD LENGTH=1344
Length=1344

 Score =  429 bits (232),  Expect = 1e-119
 Identities = 320/361 (89%), Gaps = 12/361 (3%)
 Strand=Plus/Plus

Query  122  ttctgggccccctgtttctttccccgttaac-gttttcGGTTGCGGCTACAACAACGGAG  180
            ||| ||| ||||||||||||| || | | || || |||||||| |||||||| ||||| |
Sbjct  564  TTCAGGGTCCCCTGTTTCTTTTCCTGGT-ACTGTCTTCGGTTGTGGCTACAATAACGGTG  622

Query  181  GTACCTTCGACGAAACTGGTTCTGGGATCATCGGTCCT-GGTGGCT-GTCATTTCTCACT  238
            ||||||||||||| |||||||||||||| |||||| || ||||| | ||||||| |||||
Sbjct  623  GTACCTTCGACGAGACTGGTTCTGGGATTATCGGT-CTAGGTGG-TGGTCATTTATCACT  680

Query  239  AATCTCCCAGCTCAGTTCGTCGATTTCGAAGAAATTCTCTTATTGCTTGTCTCACAAGTC  298
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  681  AATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATTTTCTTATTGCTTGTCTCACAAGTC  740

Query  299  AGCTACCACGAATGGCACAAGCGTCATAAACCTAGGCACCAACTCGATTCCTTCAAGTCT  358
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  741  AGCTACCACGAATGGCACAAGCGTCATAAACCTAGGCACTAACTCGATTCCTTCAAGTCT  800

Query  359  AAGCAAAGACTCATGTGTGATATCGACTCCATTGGTCGATAAAGAGCCTCGTACACACTA  418
            ||||||||||||  | ||| |||| ||||| ||||||||||||||||||| |||  ||||
Sbjct  801  AAGCAAAGACTCCGGCGTGGTATCAACTCCGTTGGTCGATAAAGAGCCTCTTACTTACTA  860

Query  419  CTACTTGACGCTC-AAGCTTAAAGCCCTCCGACGGGAAGAAAAAGATTCCGTACACCGGA  477
            ||||||||||||  ||||  |   |  |||| |||||||||||||||||| |||||||||
Sbjct  861  CTACTTGACGCTTGAAGCC-AT--C--TCCGTCGGGAAGAAAAAGATTCCTTACACCGGA  915

Query  478  A  478
            |
Sbjct  916  A  916



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5