BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934233
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36080.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1203 0.0
> AT2G36080.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr2:15148259-15151575 REVERSE LENGTH=1252
Length=1252
Score = 1203 bits (651), Expect = 0.0
Identities = 699/722 (97%), Gaps = 4/722 (1%)
Strand=Plus/Plus
Query 1 TCTTtctctct--ctctctTTCAAATGTCAATAAACCAATACTCAAGCGATTTTCACTAC 58
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 141 TCTTTCTCTCTCCCTCTCTTTCAAATGTCAATAAACCAATACTCAAGCGATTTCCACTAC 200
Query 59 CATTCTCTCATGTGGCAACAACAGCAGCAACACCACCACCACCAAAACGACGTCGTGGAA 118
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 201 CATTCTCTCATGTGGCAACAACAGCAGCAACAACAACAACACCAAAACGACGTCGTGGAA 260
Query 119 GAAAAAGAAGCTCTTTTCGAGAAACCCTTAACCCCAAGTGACGTCGGAAAACTCAACCGC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GAAAAAGAAGCTCTTTTCGAGAAACCCTTAACCCCAAGTGACGTCGGAAAACTCAACCGC 320
Query 179 CTCGTCATCCCAAAACAGCACGCCGAAAGATACTTCCCACTAGCGGCCGCAGCCGCAGAC 238
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 321 CTCGTCATCCCAAAACAGCACGCCGAGAGATACTTCCCACTAGCGGCCGCCGCCGCAGAC 380
Query 239 GCGGTGGAGAAAGGACTTCTCCTCTGCTTCGAGGACGAGGAAGGTAAACCATGGAGATTC 298
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 381 GCCGTGGAGAAAGGACTTCTCCTCTGCTTTGAGGACGAGGAAGGTAAACCATGGAGATTC 440
Query 299 AGATACTCGTACTGGAACAGTAGCCAGAGTTATGTCTTGACCAAAGGCTGGAGTAGATAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 441 AGATACTCGTACTGGAACAGTAGCCAGAGTTATGTCTTGACCAAAGGCTGGAGCAGATAC 500
Query 359 GTCAAGGAGAAGCACCTTGACGCCGGAGACGTCGTTCTCTTCCATCGCCACCGTGCTA-A 417
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |
Sbjct 501 GTCAAGGAGAAGCACCTTGACGCCGGAGACGTCGTTCTCTTCCATCGACACCGTTC-AGA 559
Query 418 CGGCGGAAGATTCTTCATTGGCTGGAGAAGACGCGGTGACTCTTCTTCCTCCTCCGACTC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 CGGCGGAAGATTCTTCATTGGCTGGAGAAGACGCGGTGACTCTTCTTCCTCCTCCGACTC 619
Query 478 TAATCGCCATGTTCAATCCAATGCCTCGCTTCAATATTATCCTCATGCAGGGGCTCAAGC 537
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 620 TTATCGCCATGTTCAATCCAATGCCTCGCTCCAATATTATCCTCATGCAGGGGCTCAAGC 679
Query 538 GGTGGAGAGCCAGAGAGGGAACTCGAAGACATTGAGACTGTTCGGAGTGAACATGGAGTG 597
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 680 GGTGGAGAGCCAAAGAGGCAACTCGAAGACATTAAGACTGTTCGGAGTGAACATGGAGTG 739
Query 598 CCAGCTAGACTCAGACTGGTCCGAGCCATCCACACCTGACGGTTCTAGCACATATACAAC 657
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 740 CCAGCTAGATTCGGACTGGTCCGAGCCATCCACACCTGACGGTTCTAACACATATACAAC 799
Query 658 CAATCACGACCAGTTTCATTTCTACCCTCAACAACAACACTATCCTCCTCCGTACTACAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAATCACGACCAGTTTCATTTCTACCCTCAACAACAACACTATCCTCCTCCGTACTACAT 859
Query 718 GG 719
||
Sbjct 860 GG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5