BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934242
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36180.1 | Symbols: | EF hand calcium-binding protein famil... 558 1e-158
AT5G17470.1 | Symbols: | EF hand calcium-binding protein famil... 357 5e-98
> AT2G36180.1 | Symbols: | EF hand calcium-binding protein family
| chr2:15173782-15174216 REVERSE LENGTH=435
Length=435
Score = 558 bits (302), Expect = 1e-158
Identities = 390/432 (90%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 30 ATGGCAGAGATTTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATTTCATGGGACGAA 89
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCAGAGATTTTCGAAAGTGTTGACAAAAACAAAGATGGAAAAATTTTATGGGACGAA 60
Query 90 TTTGCGGAGGCGATTCGCGTTTTTTCTCC-CAAAATAACAGCTGAAGAGATTGATAAGAT 148
|| || ||||||||||||||||||||||| |||| ||||| | ||||| |||||||||||
Sbjct 61 TTCGCAGAGGCGATTCGCGTTTTTTCTCCTCAAA-TAACATCAGAAGAAATTGATAAGAT 119
Query 149 GTTCATAGTTCTTGATGTCGATGGTGACGGTCAAATAGATGCAA-TGGAGTTTGCTTCGT 207
||| ||||||||||||||||||||||| |||||||| |||| | |||||||||||||||
Sbjct 120 GTTTATAGTTCTTGATGTCGATGGTGATGGTCAAATTGATG-ATGTGGAGTTTGCTTCGT 178
Query 208 GTTTGATGGTTAACGGCGGAGGAGAAAAAGAT---GATGAAGAAGTTGTTATGAAAGAAG 264
|||||||||| || || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 179 GTTTGATGGTCAATGGTGGAGGAGAAAAAGATACCGAAGAAGAAGTTGTTATGAAAGAAG 238
Query 265 CTTTTGATTTGTACGATATCGATGGTGATGGGAAGATTTCGGCGAGTGAGATTCATGTGG 324
|||| |||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 239 CTTTCGATTTGTATGATATGGATGGTGATGGAAAGATCTCAGCGAGTGAGATTCATGTGG 298
Query 325 TATTGAAGCGACTTGGAGAGAAACATACAATGGAGGAATGTGTTACGATGGTTCAAGCCG 384
||||||| |||||||||||||| ||||||||||| || |||||| |||||||||| |||
Sbjct 299 TATTGAAACGACTTGGAGAGAAGCATACAATGGAAGATTGTGTTGTGATGGTTCAAACCG 358
Query 385 TTGATAAAGACGGTGATGGTTTTGTTAGCTTCGAAGAGTTTAAGGTTATGATGAACTCTA 444
||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 359 TTGATAAAGACAGTGATGGTTTTGTTAATTTTGAAGAGTTTAAGATTATGATGAACTCTA 418
Query 445 AGAAAGAGTCAC 456
| ||||||||||
Sbjct 419 ACAAAGAGTCAC 430
> AT5G17470.1 | Symbols: | EF hand calcium-binding protein family
| chr5:5760966-5761406 REVERSE LENGTH=441
Length=441
Score = 357 bits (193), Expect = 5e-98
Identities = 344/418 (82%), Gaps = 6/418 (1%)
Strand=Plus/Plus
Query 24 ATGTCTATGGCAGAGATTTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATTTCATGG 83
|||||| | |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 1 ATGTCTGTTGCAGAGATCTTCGAGAGAGTCGACAAAAACAAAGATGGGAAAATCTCATGG 60
Query 84 GACGAATTTGCGGAGGCGATTCGCGTTTTTTCTCCCAAAATAACAGCTGAAGAGATTGAT 143
||||||||||| || |||||||||| |||||||| ||||||| ||||||| || |||
Sbjct 61 GACGAATTTGCTGAAGCGATTCGCGCCTTTTCTCCTTCAATAACATCTGAAGAAATCGAT 120
Query 144 AAGATGTTCATAGTTCTTGATGTCGATGGTGACGGTCAAATAGATGCAATGGAGTTTGCT 203
|| ||||||| || |||||||||| ||||| ||||| || | ||| | ||||
Sbjct 121 AACATGTTCAGAGAGATTGATGTCGACGGTGATAACCAAATCGACGTTGCGGAATATGCT 180
Query 204 TCGTGTTTGATGGTTAACGGCGGAGGAGAA-AAAGATGATGAAGA-AGTTGTTATGAAAG 261
|| || |||||| || || | |||| || ||||| || ||||| | ||||||||||||
Sbjct 181 TCTTGCTTGATGCTTGGTGGTGAAGGA-AATAAAGAGGACGAAGACA-TTGTTATGAAAG 238
Query 262 AAGCTTTTGATTTGTACGATATCGATGGTGATGGGAAGATTTCGGCGAGTGAGATTCATG 321
|||||||||||||||| || || ||||||||||| || || |||||||||||||||||||
Sbjct 239 AAGCTTTTGATTTGTATGACATTGATGGTGATGGAAAAATATCGGCGAGTGAGATTCATG 298
Query 322 TGGTATTGAAGCGACTTGGAGAGAAACATACAATGG-AGGAATGTGTTACGATGGTTCAA 380
|||||||||| || |||||||| ||||| ||||| | || |||| || ||||||||| |
Sbjct 299 TGGTATTGAAACGTCTTGGAGAAAAACAAACAATAGCAG-AATGCATTGCGATGGTTCGA 357
Query 381 GCCGTTGATAAAGACGGTGATGGTTTTGTTAGCTTCGAAGAGTTTAAGGTTATGATGA 438
||||||||| ||| |||||||| ||||| || || |||||||||||| ||||||||
Sbjct 358 GCCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGACTATGATGA 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5