BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934243
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36190.1 | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4... 2918 0.0
AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2... 1040 0.0
> AT2G36190.1 | Symbols: AtcwINV4, cwINV4 | cell wall invertase
4 | chr2:15174730-15177870 REVERSE LENGTH=2082
Length=2082
Score = 2918 bits (1580), Expect = 0.0
Identities = 1744/1823 (96%), Gaps = 12/1823 (1%)
Strand=Plus/Plus
Query 1 GATCCTGAGTCTTTGGATCAATGGGTGGTGTTTCAAATCTTATTTCTGTCTTATTA-T-T 58
|||||||||||||||||||||| | | | |||||||| ||||||||||||||||| | |
Sbjct 66 GATCCTGAGTCTTTGGATCAAT--G-GCTATTTCAAATGTTATTTCTGTCTTATTATTAT 122
Query 59 T-CTCGTAATAACCAATTTAAGCAATCAAAATATCAAAGGAATTGTTGCATTTCATCAGA 117
| || ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 123 TGCTTGTACTAATCAATTTAAGCAATCAAAATATCAAAGGAATTGATGCATTTCATCAGA 182
Query 118 TTTACGAAGAATTGCAATCTGAATCAGTCGAGTCAGTGAATCATCTTCACAGACCTAGTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTTACGAAGAATTGCAATCTGAATCAGTCGAGTCAGTGAATCATCTTCACAGACCTAGTT 242
Query 178 TCCACTTTCAACCTCCAAAGCATTGGATTAACGATCCAAATGGTCCAGTATACTACAAAG 237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTCACTTTCAACCTCCAAAGCATTGGATTAACGATCCAAATGGTCCAGTATACTACAAAG 302
Query 238 GTCTCTACCATCTCTTCTACCAATATAATACCAAGGGTGCGGTTTGGGGTAATATTATAT 297
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 303 GTCTCTACCATCTCTTCTACCAATATAACACCAAAGGTGCGGTTTGGGGTAATATTATAT 362
Query 298 GGGCCCATTCGGTTTCTAAAGACTTGGTTAACTGGGAGGCTCTTGAACCGGCCATC-CA- 355
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 363 GGGCCCATTCGGTTTCTAAAGACTTGGTTAACTGGGAGGCTCTTGAACCGG-C-TCTTAG 420
Query 356 TCCTTCAAAATGGTTCGATATCGGAGGTACATGGTCAGGTTCAATAACAATCGTACCGGG 415
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TCCTTCAAAATGGTTCGACATCGGAGGTACATGGTCCGGTTCAATAACAATCGTACCGGG 480
Query 416 AAAAGGACCGATTATCCTCTATACCGGTGTTAATCAGAATGAAACTCAGTTGCAAAACTA 475
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 481 AAAAGGACCGATTATCCTCTATACCGGTGTTAACCAGAACGAAACTCAGTTGCAAAACTA 540
Query 476 TGCAATCCCGGAGGACCCATCAGACCCTTACCTAAGGAAATGGATTAAACCGGACGATAA 535
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 TGCAATCCCAGAGGACCCATCAGACCCATACCTAAGGAAATGGATTAAACCGGACGATAA 600
Query 536 CCCGATTGCAATGCCAGACTATACCATGAACGGTTCAGCATTTCGTGACCCGACCACGGC 595
|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 601 CCCGATTGCAATCCCAGACTATACAATGAACGGTTCAGCATTCCGTGACCCGACAACCGC 660
Query 596 TTGGTTCTCCAAAGACGGGCATTGGAGAACCGTTGT-GGGATCAAAAAGAAAGCGTAGAG 654
||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 661 TTGGTTCTCCAAAGACGGGCATTGGAGAACCGTGGTAGGG-TCAAAAAGAAAGCGTAGAG 719
Query 655 GAATAGCTTACATCTACAGAAGCCGAGATTTCAAGCATTGGGTCAAAGCTAAGCACCCGG 714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAATTGCTTACATCTACAGAAGCCGAGATTTCAAGCATTGGGTCAAAGCTAAGCACCCGG 779
Query 715 TTCACTCTAAAGAGTCAACCGGTATGTGGGAATGTCCTGATTTCTTTCCGGTTTCCTTAA 774
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 TTCACTCTAAACAGTCAACCGGTATGTGGGAATGTCCTGATTTCTTCCCGGTTTCCTTAA 839
Query 775 CCGATTTCCAAAACGGTTTGGACTTGGATTACGTCGGTCCAAACACCAAGCATGTGTTGA 834
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCGATTTCCGAAACGGTTTGGACTTGGATTACGTCGGTCCAAACACCAAGCATGTGTTGA 899
Query 835 AGGTTAGCTTGGACATAACTCGGTATGAGTATTACACGCTTGGTAAATACGATCCTAAGA 894
|||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||
Sbjct 900 AGGTTAGCTTGGACATTACCCGGTACGAGTATTACACGCTTGGTAAATACGATCTTAAGA 959
Query 895 AGGACCGGTACATACCGGACGGTAATACTCCCGATGGTTGGGAGGGTTTAAGGTTCGATT 954
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 960 AGGACCGGTACATACCGGACGGTAATACTCCCGATGGTTGGGAGGGTTTAAGATTCGATT 1019
Query 955 ACGGTAATTTCTACGCTTCCAAGACATTCTTTGACTACAAAAAGAACAGAAGAATCTTAT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACGGTAATTTCTACGCTTCCAAGACATTCTTTGACTACAAAAAGAACAGAAGAATCTTAT 1079
Query 1015 GGGGTTGGGCCAATGAATCTGACACCGTTGAAGATGATATTTTGAAGGGTTGGGCTGGTA 1074
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGGGTTGGGCTAATGAATCTGACACCGTTGAAGATGATATTTTGAAGGGTTGGGCTGGTC 1139
Query 1075 TTCAGGTAATTCCAAGAACGGTACTTCTTGATTCAAGCAAGAAGCAACTAATGTTTTGGC 1134
||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1140 TTCAGGTGATTCCAAGAACGGTGCTCCTTGATTCAAGCAAGAAGCAACTTGTGTTTTGGC 1199
Query 1135 CTGTCGAAGAGATAGAGTCATTAAGAGGTAACTATGTCCGAATGAACAACCATGACATCA 1194
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1200 CTGTTGAAGAGATAGAGTCATTAAGAGGTAACTACGTCCGAATGAACAATCATGACATCA 1259
Query 1195 AGATGGGTCAACGCATAGAAGTCAAAGGAATCACTCCAGCTCAAGCCGATGTGGAAGTAA 1254
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AGATGGGTCAACGCATAGAAGTCAAAGGAATCACTCCTGCTCAAGCCGATGTGGAAGTAA 1319
Query 1255 CGTTCTATGTTGGAAGTCTAGAGAAAGCTGAGACATTTGACCCGAGTTTCAAGTTCAAAC 1314
||||||||||||||||||||||||||||||||| ||| || |||||||||| || ||||
Sbjct 1320 CGTTCTATGTTGGAAGTCTAGAGAAAGCTGAGATATTCGATCCGAGTTTCACGTGGAAAC 1379
Query 1315 CATTGGATTTGTGTAAGATTAAAGGCTCGAATGTGAGAGGCGGTGTAGGACCTTTTGGTT 1374
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CATTGGAATTGTGTAACATTAAAGGCTCGAATGTGAGAGGCGGTGTAGGACCTTTTGGTC 1439
Query 1375 TGATCACATTAGCGACTCCTGATTTGGAAGAGTACACTCCTGTCTTCTTTAGAGTCTTCA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGATCACATTAGCGACTCCTGATTTGGAAGAGTACACTCCTGTCTTCTTTAGAGTCTTCA 1499
Query 1435 AAGACACTAAAACTCATAAGCCTAAAGTTCTCATGTGTTCCGATGCTAGACCGTCGTCGT 1494
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1500 ACGACACTAAAACTCATAAGCCTAAAGTTCTCATGTGCTCCGATGCTAGACCGTCGTCGT 1559
Query 1495 TAAAGCAAGACAAGGGTCCACTCGCAAAAGATAGGATGTATAAACCATCGTTTGCTGGTT 1554
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TAAAGCAAGACACGGGTTTACTCGCAAAAGATAGGATGTATAAACCATCGTTTGCTGGTT 1619
Query 1555 TTGTGGATGTTGATATGGCTGATGGAAGGATCTCTCTAAGGAGTTTGATTGATCATTCGG 1614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1620 TTGTGGATGTTGATATGGCTGATGGAAGGATCTCTCTAAGGAGTTTGATTGATCATTCAG 1679
Query 1615 TCGTAGAGAGCTTTGGAGCATTAGGGAAAACGGTGATAACATCAAGAGTGTATCCAGTGA 1674
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1680 TAGTAGAGAGCTTTGGAGCATTAGGTAAAACGGTGATAACATCAAGAGTGTATCCAGTGA 1739
Query 1675 AAGCAGTAAAAGATAATGCACATTTGTATGTGTTTAACAATGGAACACAGACTGTGACCA 1734
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1740 AAGCAGTAAAAGAGAATGCACATTTGTATGTCTTTAACAATGGAACACAAACTGTGACCA 1799
Query 1735 TAGAGAGTCTCAATGCTTGGAACATGGAACGTCCTTTACAAATGAATGATGGAGCTCTTT 1794
|||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||
Sbjct 1800 TAGAGAGTCTCAATGCTTGGAATATGGATCGTCCTCTGCAAATGAATGATGGAGCTCTTT 1859
Query 1795 AATTTAGCTCTTCTCTCTATAGT 1817
|||||||||||||||||||||||
Sbjct 1860 AATTTAGCTCTTCTCTCTATAGT 1882
> AT3G52600.1 | Symbols: AtcwINV2, CWINV2 | cell wall invertase
2 | chr3:19506891-19509359 REVERSE LENGTH=2048
Length=2048
Score = 1040 bits (563), Expect = 0.0
Identities = 1347/1713 (79%), Gaps = 103/1713 (6%)
Strand=Plus/Plus
Query 104 TGCATTTCATCAGA-TTTACGAAG-AATTGCAATC----T-GA-ATCAGTCGAGTCAGTG 155
||||||||| || | ||| | ||| |||||||||| | || |||| | ||||||||
Sbjct 158 TGCATTTCA-CAAAGTTTTC-AAGAAATTGCAATCAAAATCGACATCATTGGAGTCAGT- 214
Query 156 AA-TCATCTTCACAG-ACCTAG-TT-TCCACTTTCAACCTCCAAAG-CATTGGATTAACG 210
|| || ||||||||| ||| | || | |||||||||||||| | |||||||| ||||
Sbjct 215 AAGTCCTCTTCACAGAACC--GCTTAT-CACTTTCAACCTCC-CCGCCATTGGATCAACG 270
Query 211 ATCCAAATGGTCCAGT-ATACTACAAAGGTCTCTACCATCTCTTCTACCAATATAATACC 269
|||| |||| |||| | | |||||| || | |||||||||||||||||||| ||| ||
Sbjct 271 ATCCGAATGCTCCAATGCT-CTACAAGGGAGTTTACCATCTCTTCTACCAATACAATCCC 329
Query 270 AAGGGTGCGGTTTGGGGTAATATTATATGGGCCCATTCGGTTTCTAAAGACTTGGTTAAC 329
|| ||||||||||||||||| ||| | ||||| || ||||||||||| |||||| | ||
Sbjct 330 AAAGGTGCGGTTTGGGGTAACATTGTGTGGGCTCACTCGGTTTCTAAGGACTTGATCAAT 389
Query 330 TGGGAGGCTCTTGAACCGGCCATCCATCCTTCAAAATGGTTCGATATCGGA-GGTACATG 388
||||| || |||||||| ||||| | || || ||||||||||| ||| | ||||||||
Sbjct 390 TGGGAAGCCCTTGAACCAGCCATTTACCCATCCAAATGGTTCGACATC-AACGGTACATG 448
Query 389 GTCAGGTTCA-ATAACAATCGTACCGGGAAAAGGACCGATTATCCTCTATACCGGTGTTA 447
||| |||||| || | | ||||||||||||||||||| |||||||||| |||||| |
Sbjct 449 GTCCGGTTCAGCTACCCA-CGTACCGGGAAAAGGACCGGTTATCCTCTACACCGGT-ATC 506
Query 448 ATC-AGAATGAAACTCAG-TTGCAAAACTATGCAATCCCGGAGGACCCATCAGACCCTTA 505
| | |||| | |||||| || |||||||| || || || | || | || ||||| ||
Sbjct 507 ACCGAGAACCAGACTCAGATT-CAAAACTACGCCATTCCACAAGATCTTTCCGACCCATA 565
Query 506 CCT-AAGGAAATGGATTAAA-CCGGACGATAACCCGATTGCAATGCCAGACT-AT-ACCA 561
||| || || ||||| |||| || ||||||||||| || | || || || | || | |
Sbjct 566 CCTCAA-GACATGGA-TAAAGCCAGACGATAACCCCATCGTAAAACCCGA-TAATGGCGA 622
Query 562 TGAACGGTTCAGCATTT-CGTGACCCGACCACGGCTTGGTTC-TC--CAAAGACGGGCAT 617
|||||| || || ||| |||||||||||||||||||||||| | ||||| ||| ||
Sbjct 623 -GAACGGATCCGC-TTTCCGTGACCCGACCACGGCTTGGTTCAACAAAAAAGATGGGTAT 680
Query 618 TGGAGAACCG-TTGTGGGATCAAAAAGAAAGCGTAGAGGAATAGCTTACATCTAC-AGAA 675
||||||| | |||| || ||||| |||||| |||||||| ||||| || ||| || |
Sbjct 681 TGGAGAA-TGCTTGTTGGCTCAAAGAGAAAGAACAGAGGAATTGCTTATATGTACAAG-A 738
Query 676 GCCGAGATTTCAAGCATTGGGTC-AAAGCTAAGCACCCGGTTCACTCTAA-AGAGTCAAC 733
|||| || ||||| | |||||| ||||| || | || | ||||| || | || |||
Sbjct 739 GCCGTGACTTCAAAAAATGGGTCAAAAGC-AAACGTCCTATCCACTC-AAGAAAGAAAAC 796
Query 734 CGGTATGTGGGAATGTCCTGATTTCTTTCCGGTTTCCTTAACCGATTTCCAAAACGGTTT 793
|||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||
Sbjct 797 CGGTATGTGGGAATGTCCCGATTTCTTCCCGGTATCCGTAACCGACAAGAAAAACGGTTT 856
Query 794 GGACTTGGA-TTACGTCGGTCCAAACACCAAGCATGTGTTGAAGGTTAGCTTGGACATAA 852
|||||| | |||| |||||||||| |||||||||||||||||||||| |||||| | |
Sbjct 857 GGACTT-CAGCTACGACGGTCCAAACGCCAAGCATGTGTTGAAGGTTAGTTTGGACTTGA 915
Query 853 CTC-GGTATGAGTATTACACGCTTGGTAA-ATACGATC-CTAAGAAGGACCGGTACATAC 909
| | | || ||||| ||||| ||||| || || || | | |||||||| || |||| |
Sbjct 916 C-CAGATACGAGTACTACACTCTTGG-AACGTATGA-CACCAAGAAGGATCGTTACAGGC 972
Query 910 CGGACGGTAATACTCCCGATGGTTGGGAGGGTTTAAGGTTCGATTACGGTAATTTCTACG 969
| |||||| | ||||| || |||||||| ||||| || || ||||| ||||| | ||| |
Sbjct 973 CAGACGGTTACACTCCTGACGGTTGGGATGGTTTGAGATTTGATTATGGTAACTACTATG 1032
Query 970 CTTCCAAGACATTCTTTGACT-ACAAAAAGAACAGAAGAA-TCTTATGGGGTTGGGCCAA 1027
| || |||||||||||||| | |||| | ||||||||||| |||| ||||| ||||||||
Sbjct 1033 CGTCAAAGACATTCTTTGA-TGACAAGACGAACAGAAGAATTCTT-TGGGGGTGGGCCAA 1090
Query 1028 TGAATCTGACACCGTTGAAGATGATATTTTGAAGGGTTGGGCTGGTATTCAGGTAATTCC 1087
|||||| ||||||||| ||||||||| ||||||||||||| || |||||| | || ||
Sbjct 1091 TGAATCCGACACCGTTCAAGATGATACCGTGAAGGGTTGGGCCGGAATTCAGCTTATCCC 1150
Query 1088 AAGAACGGTACTT-CTTGATTCAAGCAAG-AAGCAACTAATGTTTTGGCCTGTCGAAGAG 1145
|||||| | ||| ||||| || ||| | |||||||| ||||||||||| | ||||||
Sbjct 1151 AAGAACAAT-CTTGCTTGACTCTAGC-GGTAAGCAACTCGTGTTTTGGCCTATTGAAGAG 1208
Query 1146 ATAGAGTCATTAAGAGGTAACTATGTCCGAATGAACAACCATG-ACATCAAGATGGGTCA 1204
|| |||||||| ||||| || |||||| ||||| |||||| | | || ||||||| ||
Sbjct 1209 ATTGAGTCATTGAGAGGAAAGAATGTCCAAATGACCAACCA-GAAAATGGAGATGGGCCA 1267
Query 1205 ACGCATAGAAGTCAAAGGAATCACTCCAGCTCAAGCCGATGTGGAAGTAACGTTCTATGT 1264
|||| | || ||| ||||||||||||| ||||| | |||||||| || || ||| | ||
Sbjct 1268 ACGCTTTGAGGTCCAAGGAATCACTCCTGCTCAGGTGGATGTGGATGTGACATTCAACGT 1327
Query 1265 TGGAAGTCTAGAGAAAGCTGAGACA-TTTGACCCGAG-TT-TCAAGTTCAAACCATTGGA 1321
||||| ||||||||| || || | | |||||| || || ||| | |||||| | ||
Sbjct 1328 TGGAAATCTAGAGAAGGCCGA-AAAGTTTGACGAAAGCTTCGCAA-CT-AAACCACTAGA 1384
Query 1322 TTTGTGTAAGATT-AAAGGCTCGAATGTGAGA-GGCGGTGTAGGACCTTTTGGTTTGATC 1379
|| ||||| || ||||| |||||||||| | || || || || |||||||||||||||
Sbjct 1385 GTTATGTAA-CTTGAAAGGTTCGAATGTGA-ATGGTGGAGTTGGTCCTTTTGGTTTGATC 1442
Query 1380 ACATTAGCGAC-TCCTGATTTGGAAGAGTACACTCCTGTCTTCTTTAGAGTCTTCAAAGA 1438
|| || || || | |||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1443 ACGTTGGCTACAT-CTGACTTAGAAGAATACACTCCTGTTTTCTTTAGAGTCTTCAAAGA 1501
Query 1439 CACTAAAACTC-ATAAGCCTAAAGTTCTCATGTGTTCCGATG-CTAGACCGTC--GTCGT 1494
| | | | | |||||||| ||||||||||| || || | | || || || ||| |
Sbjct 1502 TGCCGCATC-CAACAAGCCTAAGGTTCTCATGTGCTCTGACGCCAAG-CCTTCGAGTC-T 1558
Query 1495 TAAAGCAAGACA-AGGGTCCACT--CGCAAAAGATAGGATGTATAAACCATCGTTTGCTG 1551
||| |||||| ||| ||| ||| || || |||||||| ||||||||||||||||
Sbjct 1559 CAAA-AAAGACACCGGG---ACTGACGCCAAGGAGAGGATGTACAAACCATCGTTTGCTG 1614
Query 1552 GTTTTGTGGATGTTGATATGGCT-GATGGAAGGATCTCTCTAAGGAGTTTGATTGATCAT 1610
||||||||||||| | | | || || |||| |||||||||||||||||||||||||||
Sbjct 1615 GTTTTGTGGATGTCGGTCTC-CTTGACGGAAAGATCTCTCTAAGGAGTTTGATTGATCAC 1673
Query 1611 TCGGTCGTAGAGAGCTTTGGAGCATTAGGGAAA-ACGGTGATAACATCAAGAGTGTATCC 1669
||||| || ||||||||||||||| ||| ||| || ||||||||||| |||||||||||
Sbjct 1674 TCGGTTGTGGAGAGCTTTGGAGCAAAAGG-AAAGACAGTGATAACATCTAGAGTGTATCC 1732
Query 1670 AGTGAAA-GCAGTAAAAGATAATGCACATTTGTATGTGTTTAACAATGGAACACAGAC-T 1727
| ||| |||||| ||| || || ||||||| ||| |||||||| || |||| || |
Sbjct 1733 -GACAAAAGCAGTAGGAGAAAAAGCTCATTTGTTTGTCTTTAACAACGGCTCACA-ACCT 1790
Query 1728 GTGACCATAGAGAGTCTCAATGCTTGGAACATG 1760
|||||| ||||||| |||||||| |||||||||
Sbjct 1791 GTGACCGTAGAGAGCCTCAATGCATGGAACATG 1823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89909176095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5