BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934245
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36210.1 | Symbols: | SAUR-like auxin-responsive protein fa... 651 0.0
> AT2G36210.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:15186040-15186804 REVERSE LENGTH=765
Length=765
Score = 651 bits (352), Expect = 0.0
Identities = 413/442 (93%), Gaps = 5/442 (1%)
Strand=Plus/Plus
Query 10 TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCCAAGAAAAT 69
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 TTAAAGAAGAAAAATGCTAGGAAAAAGAATAGCTTCCTTCAAGAACTTAGCAAAGAAAAT 118
Query 70 GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCCCAGTCAACATATAA 129
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 119 GAAGAGCATCAACACGACGACGAGAAGCGGAGGAGAAGGCGGCTCGGAGTCAACTTATAA 178
Query 130 CGAGTCTCTTCTGATGAATGAGGCGGAGGAGACGGCGATG--GA-GACAAAGACGCCGAC 186
||||||||||||||||||||||||||| ||| |||||||| | | |||||||||||||
Sbjct 179 CGAGTCTCTTCTGATGAATGAGGCGGACGAGGCGGCGATGATGGCGTCAAAGACGCCGAC 238
Query 187 CGGGACCTTCGCAGTGTACGTAGGAGAAGAGCGCGTGAGGCGCGTGGTTCCGACAAGCTA 246
||||| || || ||||||||||| ||||||||||||| ||||||||| || ||||||||
Sbjct 239 GGGGACGTTTGCGGTGTACGTAGGGGAAGAGCGCGTGAAGCGCGTGGTACCAACAAGCTA 298
Query 247 CTTGAATCATCCTCTCTTTC-GGATGCTCCTTAACAAGTCTCACGACGAGTTCCTCTGTT 305
|||||||||||||||||| | |||||||||| ||||||||||||||||||| |||||||
Sbjct 299 CTTGAATCATCCTCTCTT-CAGGATGCTCCTCGACAAGTCTCACGACGAGTTTCTCTGTT 357
Query 306 TCGAGCAGAAGGTTATGTTGGTCGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTAA 365
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 358 TCGAGCAGAAGGTTATGTTGGTGGTCCCTTGCAGCCTCTCCGTTTTCCAAGACGTTGTTA 417
Query 366 ACGCCATCGAGTCTTGTAACGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT 425
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGCCGTCGAGTCTTGTAATGGCAACTTCGATTTCGGCGAGTTTGTCGAGGAGTTTCTAT 477
Query 426 AAATTTAATTTCGACTTCTTCT 447
|||||||||| |||||||||||
Sbjct 478 AAATTTAATTCCGACTTCTTCT 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21263257827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5