BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934247
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36230.1 | Symbols: APG10, HISN3 | Aldolase-type TIM barrel ... 1469 0.0
> AT2G36230.1 | Symbols: APG10, HISN3 | Aldolase-type TIM barrel
family protein | chr2:15193694-15195538 REVERSE LENGTH=1128
Length=1128
Score = 1469 bits (795), Expect = 0.0
Identities = 906/959 (94%), Gaps = 10/959 (1%)
Strand=Plus/Plus
Query 4 ACAGTTCCAGTTCCAAAGATGAGAACTTTGAGCTCCCAATTATTGTACTCCAATGGTGGT 63
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 12 ACAGTTTCAGTTCCAAAGATGAGAACTTTGAGCTCCCAATTA---TACTCCAATGGTGGT 68
Query 64 CTCGCTTGGTTCCAGAAGAAGAACCAAAGCTCTCTGTTTAATC-ATCATCTCAGAATCTC 122
||| ||||||||||||||||||| || ||||||||| || ||| | ||||||||| ||||
Sbjct 69 CTCACTTGGTTCCAGAAGAAGAATCAGAGCTCTCTG-TTCATCAAGCATCTCAGAGTCTC 127
Query 123 TAAACCATCGAGAGTTCAGCTCATATCTGCTGTTCAATTCAGACCTTGCATCGACATTCA 182
|||||||||||| ||||||||||||||||||||||||||| | || |||||||| |||||
Sbjct 128 TAAACCATCGAGGGTTCAGCTCATATCTGCTGTTCAATTCCGTCCGTGCATCGATATTCA 187
Query 183 CAAGGGAAAAGTGAAACAAATAGTTGGATCCACAC-TCAGTGACTTGAAAGAGGAAGGTT 241
||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||
Sbjct 188 TAAGGGAAAAGTGAAACAGATAGTTGGATCCACACTTC-GTGACTTGAAAGAGGATGGTT 246
Query 242 CAGTTCTTGTAACGAATTTTGAATCGGATAAGTCTGCGGAAGAGTATGCAAAGATGTACA 301
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CAGTTCTCGTTACGAATTTTGAATCGGATAAGTCTGCGGAAGAGTATGCAAAGATGTACA 306
Query 302 AAGAAGATGGTCTTACGGGTGGTCATGTCATAATGCTTGGAGCAGACCCTTTAAGCCAAG 361
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 307 AAGAAGATGGGCTTACGGGTGGTCATGTGATAATGCTTGGAGCAGACCCTTTAAGCCAAG 366
Query 362 CTGCTGCTATTGGAGCATTACATGCTTATCCAGGCGGTTTGCAAGTTGGAGGTGGAATCA 421
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 CTGCAGCTATTGGAGCATTACATGCTTATCCTGGCGGTTTGCAAGTTGGAGGTGGAATCA 426
Query 422 ATTCTGAGAATTGCTTGAGTTATATTGAGGAAGGAGCAAGCCACGTCATTGTCACTTCGT 481
|||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 427 ATTCTGAGAATTGCATGAGTTATATTGAGGAGGGAGCAAGCCATGTCATTGTCACTTCGT 486
Query 482 ATGTGTTTAACAATGGAAAGATTGATCTTGAAAGACTCAAAGATCTTGTGAGCATTGTTG 541
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 487 ATGTATTTAACAATGGAAAGATTGATCTTGAAAGACTCAAAGATATTGTGAGCATTGTTG 546
Query 542 GGAAACAAAGACTGATATTGGACCTTAGCTGCAGAAAGAAGGATGGAAGATATGCAATTG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 547 GGAAACAAAGACTGATATTGGACCTTAGCTGCAGAAAGAAGGATGGAAGATACGCAATTG 606
Query 602 TTACTGATAGATGGCAGAAGTTCAGCGACGTCATCCTTGACGAGAAATCATTGGAGTTTC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTACTGATAGATGGCAGAAGTTCAGCGACGTCATCCTTGACGAGAAATCATTGGAGTTTC 666
Query 662 TTGGAGGATTTGCAGATGAGTTTCTGGTGCATGGCGTAGACGTTGAAGGAAAGAAGCTAG 721
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGGAGGATTTTCAGATGAGTTTCTGGTGCATGGCGTAGACGTTGAAGGAAAGAAGCTAG 726
Query 722 GGATCGACGAAGAGCTTGTGGCATTGCTTGGCAACTATTCTCAGATTCCGGTAACTTATG 781
||||||| ||||||||||| ||||||||||||||||| |||| |||||| ||||||||||
Sbjct 727 GGATCGATGAAGAGCTTGTAGCATTGCTTGGCAACTACTCTCCGATTCCAGTAACTTATG 786
Query 782 CTGGAGGTGTGACGGTGATGGATGATGTAGAGAGGATCGAAAAA-GCAGGAAAGGGACGT 840
| |||||||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 787 CGGGAGGTGTGACGGTAATGGATGATGTAGAGAGGATC-AAGGACGCAGGAAAGGGACGT 845
Query 841 GTGGATGTAACAGTGGGAAGTGCCTTAGACATTTTCGGGGGAAATCTTCCGTACAAAGAC 900
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 846 GTAGATGTAACAGTGGGAAGTGCCTTAGACATTTTCGGGGGAAATCTTCCATACAAAGAC 905
Query 901 GTTGTCGCTTGGCATCACAAGCAGCTCTCACTCCAGTAATATCGCCATTTTCAC-TTTG 958
|| |||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||
Sbjct 906 GTCGTCGCTTGGCATCACAAGCAGCACTCACTCCATTGATATCGCCATTTTCACCTTTG 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5