BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934248
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 2392 0.0
> AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15195653-15197264 FORWARD LENGTH=1612
Length=1612
Score = 2392 bits (1295), Expect = 0.0
Identities = 1443/1515 (95%), Gaps = 8/1515 (1%)
Strand=Plus/Plus
Query 14 ACAGAGAGTGATGCGATGGAACAAGAAGAATGTTATCAATCTCGTTTCCAAGTC-CAATC 72
|||||||||||||||||||||||||||||| ||||||| |||||| || ||||| | |||
Sbjct 1 ACAGAGAGTGATGCGATGGAACAAGAAGAACGTTATCAGTCTCGTCTCAAAGTCTC-ATC 59
Query 73 ATCTCCCGGCGCCGATTACGCCACCGTCACCGGAGATTTACCGAATACCTAATCCTCCAC 132
|||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 60 ATCTTCCGGCGCCGATTACGCCACCGTTACCTGAGATTTACCGAATACCTAATCCTCCAC 119
Query 133 CAAAGCTTCCGGAGATCTCAATTCCTCCGACTCTAACTCTCTCTCCATCTCCCAAACACT 192
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 120 CAAAGCTTCCGGAGATCTCAATTCCTCCGACACTTACGCTCTCTCCATCTCCCAAACACT 179
Query 193 CCAATTTCGTCAATTTTCTCGAGAACAACCTCCCTCACCATCAAACCCTAACTCCACAAA 252
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 180 CCAATTTCGTCAATTTCCTCGAGAACAATCTCCCTCACCATCAAACACTAACGCCACAAA 239
Query 253 ATCTCCTCGGATTCCTCCGTTCCAAGCCCCGTCATCATCCGCTCTACGCTCATTATGACT 312
||| || |||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 240 CTCTTCTTGGATTCCTCCGTTCCAAGATCCGTAACCATCCGCTCTACGCTCATTATGACT 299
Query 313 TCGCCGTCTTCAATTGGGCAGCTACGCTCGACACTTTCCGTCATGATCACGATTCTTTCC 372
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TCGCCGTCTTTAATTGGGCAGCTACACTCGACACTTTCCGTCATGATCACGATTCTTTCC 359
Query 373 TCTGGATGTCGAGATCACTCGCTGCCACGCACCGGTTTCACGATCTATATCGTCTCCTCT 432
|||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||
Sbjct 360 TCTGGATGTCGAGATCACTCGCCGCCACGCACCGGTTTGACGATCTTTATCGTCTTCTCT 419
Query 433 CTTTCGTAGCGGCGAATCCATGTCCTTGTTCTTCAGGTATCTTCTCTTGTCCAGAGCTTG 492
|||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 420 CTTTTGTAGCTGCGAATCCATGTCCTTGTTCCTCAGGTATATTCTCTTGTCCAGAGCTTG 479
Query 493 AACCTATTTTCCGATCCGCCATTGATGCGTATTGTAGAGCTGGGAAAATGGATTATTCGT 552
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 480 AACCTATTTTCCGATCCGCCATTGATGCGTATTGTAGAGCTAGGAAAATGGATTATGCTT 539
Query 553 TGTTAGCGTTTGATACTATGAAGAGATTGATCGATGGTAAACCAAATGTTGGAGTTTATA 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTAGCGTTTGATACTATGAAGAGATTGATCGATGGTAAACCAAATGTTGGAGTTTATA 599
Query 613 ACACTGTTGTGAATGGATATGTGAAATCTGGAGATATGGATAAGGCTTTAAGGTTTTACC 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACACTGTTGTGAATGGATATGTGAAATCTGGAGATATGGATAAGGCTTTAAGGTTTTACC 659
Query 673 AGAGGATGGGAAAGGAAAGAGCAAAGCCAGATGTATGCACGTTTAACACCCTCATCAATG 732
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 AGAGGATGGGAAAGGAAAGAGCAAAGCCAGATGTATGCACGTTTAACATTCTCATCAATG 719
Query 733 GTTATTGTAGAAGCTCTAAGTTTGATTTGGCATTGGATTTGTTCAGGGAGATGAAGGAGA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTATTGTAGAAGCTCTAAGTTTGATTTGGCATTGGATTTGTTCAGGGAGATGAAGGAGA 779
Query 793 AAGGTTGTGAACCGAATGTGGTTAGCTTCAACACTCTGATTAGAGGGTTTTTGAGCAGGG 852
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 780 AAGGTTGTGAACCGAATGTGGTTAGCTTCAACACTCTTATTAGAGGGTTTTTGAGCAGTG 839
Query 853 GTAAAATCGAGGAAGGTATCAAAATGGCTTATGAGATGATTGAGATAGGTTGTAGATTCT 912
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 840 GTAAAATCGAGGAAGGTGTTAAAATGGCTTATGAGATGATTGAGCTAGGTTGTAGATTCT 899
Query 913 CAGAAGCTACTTGTGAGATTCTGGTTGATGGGTTGTGTAGAGAAGGTCGGGTTGACGATG 972
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 CAGAAGCTACTTGTGAGATTCTTGTTGATGGGTTGTGTAGAGAAGGTCGGGTTGACGATG 959
Query 973 CTTGTGGATTGGTGATCGATCTTTCGAACA-GTAGGGTTTTACCGAGTG-GTTTTGATTA 1030
|||||||||||||| ||||||||| ||||| | ||||||||||| |||| |||| |||||
Sbjct 960 CTTGTGGATTGGTGCTCGATCTTTTGAACAAG-AGGGTTTTACCTAGTGAGTTT-GATTA 1017
Query 1031 TGGTAGTTTAGTTAAGAAACTCTGTGGAGAAAACAAGGGGGATAGAGCAATGGAGATGGT 1090
||||||||| ||| |||||||||| ||||||||||||| || |||||||||||||||| |
Sbjct 1018 TGGTAGTTTGGTTGAGAAACTCTGCGGAGAAAACAAGGCGGTTAGAGCAATGGAGATGAT 1077
Query 1091 GGAGGAGCTGTGGAAGAAAGGCCAAACCCCATGTTTCATTGCTTGTACTACACTCGTAGA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1078 GGAGGAGCTGTGGAAGAAAGGCCAAACCCCATGTTTCATTGCTTGTACTACACTCGTCGA 1137
Query 1151 AGGGTTGAGGAAATCAGGAAGAACAGAGAAAGCATCAGGATTTATGGAAGA-GATGATGA 1209
||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 1138 AGGGTTGAGGAAATCAGGAAGAACAGAGAAAGCGTCAGGGTTTATGGA-GAAGATGATGA 1196
Query 1210 ACGCAGGAATCCTTCCCGATAGTGTGACATTTAACTTGCTTCTTCGGGATCTCTGCAGTT 1269
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATGCAGGAATTCTTCCCGATAGTGTGACATTTAACTTGCTTCTTCGGGATCTCTGCAGTT 1256
Query 1270 CTGATCGTTCTACTGATGCAAACAGATTGAGACTTTTGGCATCAAGCAAAGGATATGAAC 1329
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTGATCATTCTACTGATGCAAACAGATTGAGACTTTTGGCATCAAGCAAAGGATATGAAC 1316
Query 1330 CCGATGAGACAACGTACCATGTTTTGGTTTCGGGATTCACAAAAGAAGGGAGAAGAAAGG 1389
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1317 CCGATGAGACAACGTACCATGTTTTGGTTTCGGGGTTCACGAAAGAAGGGAGAAGAAAGG 1376
Query 1390 AAGGAGAAGTTATAGTGAACGAGATGTTGGATAAAGATATGCTGCCTGATATCTTTACAT 1449
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1377 AAGGAGAAGTTCTAGTGAACGAGATGTTGGATAAAGATATGTTGCCTGATATCTTTACAT 1436
Query 1450 ATAATAGATTGATGGATGGCTTGTCCTGCTCTGGAAAATTCTCAAGGAAGCAAGTCCGGA 1509
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1437 ATAATAGATTGATGGATGGCTTGTCCTGCACTGGAAAATTCTCAAGGAAACAAGTCCGGA 1496
Query 1510 TGTCGTAACCTGTGT 1524
||| |||||||||||
Sbjct 1497 TGTTGTAACCTGTGT 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75853023495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5