BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934258
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36320.1 | Symbols: | A20/AN1-like zinc finger family prote... 963 0.0
AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family prote... 222 3e-57
> AT2G36320.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr2:15228788-15230496 FORWARD LENGTH=1533
Length=1533
Score = 963 bits (521), Expect = 0.0
Identities = 682/752 (91%), Gaps = 41/752 (5%)
Strand=Plus/Plus
Query 17 AATTATGGCGGAAGAACATCGATGCGAGACACCGGAAGGTCACCGTCTTTGCGTTAACAA 76
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 421 AATTATGGCGGAAGAACATCGATGCGAGACGCCTGAAGGTCACCGTCTCTGCGTTAACAA 480
Query 77 TTGCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTTTGTTCAAACTGTTACGGCGATCT 136
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CTGCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCT 540
Query 137 CTGTCTTAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTCTCC 196
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTCTCC 600
Query 197 GGTGATCGCACCTGTTCTCGAAAATTACGCGGCGGAATTAGAGATCCCGACGACGAAGAC 256
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 601 GGTGATCGCACCTGTTCTCGAAAACTACGCGGCGGAGTTAGAGATCCCGACGACGAAGAA 660
Query 257 G---GAGGAGAAAAAGCCGATTCAAAATCCGACGGAGCAACCTCCTTCTCCGCCGCAACG 313
| ||||||||||| |||||||||| ||||||||||||||| | |||||||||||||
Sbjct 661 GACAGAGGAGAAAAAACCGATTCAAATTCCGACGGAGCAACCG--T-CTCCGCCGCAACG 717
Query 314 GCCGAATCGATGCACCGTGTGTAGGAAACGGGTCGGGTTAACCGGATTTATGTGCCGGTG 373
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 718 GCCGAATCGATGCACCGTATGTAGGAAACGGGTCGGGTTAACCGGGTTTATGTGTCGGTG 777
Query 374 CGGGACGACGTTTTGTGGGAGTCATAGGTATCCGGAGGTTCACGGTTGCACGTTCGATTT 433
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 778 TGGGACGACTTTTTGTGGGAGTCATAGGTATCCGGAGGTTCATGGTTGTACGTTTGATTT 837
Query 434 CAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATAGCGGCGAAGCT 493
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 CAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATTGCGGCGAAGCT 897
Query 494 TCAGAAAATATGAATCGGAGGAGCCGTTTG---G-TTTGCTC-CGTTGACC-TGAGAAGA 547
|||||||||||||||||||| ||||| | | ||| || | || ||| |||||| |
Sbjct 898 TCAGAAAATATGAATCGGAG---CCGTT-GACCGATTT-CTATCTTT-ACCCTGAGAAAA 951
Query 548 TTTCGAT-GTTCTCGGTGGATCTCAGCCGTTCATTATGTTATTGTATTACGGACACGTGT 606
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TTTCGATTGT-CTCGGTGGATCTCAGCCGTTCATTATGTTATTGTATTACGGACACGTGT 1010
Query 607 CACGCGATTAAGGTTGAGATGgtttcgtttcgtttcgtttcgtcgtgaactttttaaatt 666
| | ||||||||||||||||||||||| |||||||||| ||
Sbjct 1011 CGCAAGATTAAGGTTGAGATGGTTTCGT-------------------AACTTTTTAA-TT 1050
Query 667 attttctttgtttatttcCGAAAGAAATTAAAGTTTTTATAATTGTGTGGCTTTTGCTTG 726
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1051 ATTTTCTTTGTTTATTTCCGAA-GAAATTAAAGTTTTTATGATTGTGTGGCTTTTGCTTG 1109
Query 727 TaaaaaaaaaaaGGATTTCTCTTTGGGAAAAA 758
|||||||||||||| |||||||||||||||||
Sbjct 1110 TAAAAAAAAAAAGGGTTTCTCTTTGGGAAAAA 1141
> AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family protein
| chr3:19569311-19570682 FORWARD LENGTH=1129
Length=1129
Score = 222 bits (120), Expect = 3e-57
Identities = 183/212 (86%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 313 GGCCGAATCGATGCACCG-TGTGTAGGAAACGGGTCGGGTTAACCGGATTTATGTGCCGG 371
|||||||||| |||| || |||||||||||||||||||||||||||||| | |||||||
Sbjct 572 GGCCGAATCGGTGCA-CGACGTGTAGGAAACGGGTCGGGTTAACCGGATTCAAGTGCCGG 630
Query 372 TGCGGGACGACGTTTTGTGGGAGT-CATAGGTATCCGGAGGTTCACGGTTGCACGTT-CG 429
||||| |||| |||||| ||| || |||||||| |||||| | || || |||| | | ||
Sbjct 631 TGCGGTACGATGTTTTGCGGG-GTTCATAGGTACCCGGAGATCCATGGATGCA-GCTACG 688
Query 430 ATTTCAAATCGGCGGGACGTGAAGAGATCGCGAAAGCTAATCCGTTGGTTATAGCGGCGA 489
||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||| ||||
Sbjct 689 ATTTCAAATCGGCCGGACGTGAAGAGATCGCGAAAGCGAATCCGTTGGTGAAAGCAGCGA 748
Query 490 AGCTTCAGAAAATATGAATCGGAGGAGCCGTT 521
|||||||||| |||||| || || |||||||
Sbjct 749 AGCTTCAGAAGATATGA-TC--AG-AGCCGTT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36972332192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5