BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934271
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36480.3 | Symbols: | ENTH/VHS family protein | chr2:153025... 1304 0.0
> AT2G36480.3 | Symbols: | ENTH/VHS family protein | chr2:15302567-15306274
REVERSE LENGTH=2661
Length=2661
Score = 1304 bits (706), Expect = 0.0
Identities = 907/998 (91%), Gaps = 38/998 (4%)
Strand=Plus/Plus
Query 32 GGATGACTCTGTACGGATCCCATCTTCAAGTAGTCAGTTTAAAAACACAAATATGCGTGA 91
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GGATGACTCTGTACGGCTCCCATCTTCAAGTAGTCAGTTTAAAAACACAAATATGCGTG- 1345
Query 92 ACTACCTGATGCATCTCAAGTGGAAATCTTTGACTCTAAGTTGGCAGCTGAAAATGCTCC 151
| | | | | | | ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1346 A--A-C---T--A-C-C-AGTGGAAATCTTTGACTCTAAGTCAGCAGCTGAAAATGCCCC 1394
Query 152 AGGCCTAACTATTGCCTCAGAAGCTACAGGACAACCCAACATGAGTGATTTGCTGGAAGC 211
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1395 AGGCCTTACTCTTGCCTCAGAAGCTACAGGACAACCCAACATGAGTGATTTGCTAGAAGC 1454
Query 212 TGTCATGAAGAGTGGAATCCTTTCTAATAATTCAACACATGGTGCGATCAAGGAGGAAAT 271
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1455 TGTCATGAAGAGTGGAATCCTTTCTAATAATTCAACATGTGGTGCGATCAAGGAGGAAA- 1513
Query 272 TTCTCAGGATGAGGTTAACCCAGGGGCACTAACCCTATCAGCGGCCTCTAAGCCTAAGAA 331
||| |||||||| ||||| |||||||||||||| |||| ||||||||||||||| |
Sbjct 1514 --GTCATGATGAGGTCAACCCGGGGGCACTAACCCTGCCAGCAGCCTCTAAGCCTAAG-A 1570
Query 332 TTTGCCATCAGCATTGCCAATTTCATTGGCTGGTGACAATTTATTAGCTCGTTTAAAAGT 391
| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1571 -----C-T-----TTGCCAATTTCATTGGCTACTGACAATTTATTAGCTCGTTTAAAAGT 1619
Query 392 TGAACAATCCTCCGCACCACTTGTCTCATGTGCAGCGTCTCTTACTGGCATCACATCAGT 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 TGAACAATCCTCCGCACCACTTGTCTCATGTGCAGCGTCTCTTACTGGCATCACCTCAGT 1679
Query 452 ACAAACGTCAAAAGAGAATAGTAAGGCCTCAGATCCTCTTTCATGCCTCTTGAGCTCCTT 511
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1680 ACAAACGTCAAAAGAGAAAAGTAAGGCCTCAGATCCTCTTTCATGCCTCTTAAGCTCTTT 1739
Query 512 AGTTTCAAAGGGCTTGATATCTGCTTCAAAGACAGAGCAGCCATCGGCTCCTTCCATAAC 571
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1740 AGTTTCGAAGGGCTTGATATCTGCTTCGAAGACAGAGCTGCCATCGGCTCCTTCCATAAC 1799
Query 572 GCAGGAATATAGTCCTGATCATTCCACCAATAGCTCTATGTCTGTATCTGTGGTTCCATC 631
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1800 GCAGGAACACAGTCCTGATCATTCCACCAATAGCTCTATGTCTGTATCTGTGGTTCCAGC 1859
Query 632 AGATGCTCAACCATCTGTTCTGGTGAAGAAGGGGCCATCCACTGCCCCTAAGGTAAAAGG 691
||||||||| ||||||||| |||||||| ||| ||||| ||||||||||||||||||||
Sbjct 1860 AGATGCTCAGCCATCTGTTTTGGTGAAG--GGG-CCATCTACTGCCCCTAAGGTAAAAGG 1916
Query 692 GTTAACTGCA---TCTGAGACATCAAAATCTGAACCTGAGGACCTCATAGGATTGAAGTT 748
|||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1917 GTTAGCTGCACCATCTGAAACATCAAAATCTGAACCCAAGGACCTCATAGGATTGAAGTT 1976
Query 749 TAGGGCAGACAAAATCCGTGAACTTCACCCCTCTGTCATTAGTAGTCTCTTTGATGATCT 808
|||||| ||||||||||||||||||||||| || |||||||||||||| || ||||| ||
Sbjct 1977 TAGGGCGGACAAAATCCGTGAACTTCACCCTTCGGTCATTAGTAGTCTATTCGATGACCT 2036
Query 809 TCCACATCTCTGCACCTCCTGCGGCGTTCGCCTTAAACAAAAGGAAGAACTTGATAGGCA 868
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2037 TCCCCATCTCTGCACCTCCTGCAGCGTTCGCCTTAAACAAAAGGAAGAACTTGATAGGCA 2096
Query 869 CATGGAGTTGCATGATAAGA-GTAAGGGCGAGTTAAGTGGCAAAAACAGTAAATGTAGGG 927
||||||| |||||||||||| | ||| |||||||||||||| |||||||||||||||||
Sbjct 2097 CATGGAGCTGCATGATAAGAAG-AAGCTCGAGTTAAGTGGCACAAACAGTAAATGTAGGG 2155
Query 928 TTTGGTTTCCAAAGGTTGAAAACTGGATTGCAGCAAAAGCTGGAGAGTTAGAACCTGAAG 987
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 2156 TTTGGTTTCCAAAGGTTGATAACTGGATAGCAGCAAAAGCGGGAGAGTTAGAACCTGAAT 2215
Query 988 ATGAGGAAGTTCTGAATTGAACCTTGAGAGTGCT-TTG 1024
|||| |||||||||| | |||||| ||||||||| |||
Sbjct 2216 ATGAAGAAGTTCTGAGT-GAACCT-GAGAGTGCTATTG 2251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50485317735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5