BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934276

Length=602
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36450.1 | Symbols: HRD | Integrase-type DNA-binding superfa...   870    0.0  


> AT2G36450.1 | Symbols: HRD | Integrase-type DNA-binding superfamily 
protein | chr2:15294303-15294857 REVERSE LENGTH=555
Length=555

 Score =  870 bits (471),  Expect = 0.0
 Identities = 528/556 (95%), Gaps = 2/556 (0%)
 Strand=Plus/Plus

Query  28   ATGCAAGGAACCTCCAAAGACAATGGCGGCCGTCACCCTTTGTACAAGGGAGTGAGACAA  87
            |||||||||||||||||||||||||||||||| ||||||||||||| |||||| || || 
Sbjct  1    ATGCAAGGAACCTCCAAAGACAATGGCGGCCGCCACCCTTTGTACAGGGGAGTAAGGCAG  60

Query  88   CGAAAGAACTCAAACAAATGGGTTTCTGAGATCCGCGAGCCGAGAAAACCTAACCGTATC  147
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   CGAAAGAACTCAAACAAATGGGTTTCTGAGATCCGTGAGCCGAGAAAACCTAACCGTATC  120

Query  148  TGGTTAGGAACATTCTCTACCCCCGAGATGGCGGCAATAGCCTATGACGTGGCAGCTCTA  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGGTTAGGAACATTCTCTACCCCCGAGATGGCGGCAATAGCCTATGACGTGGCAGCTCTA  180

Query  208  GCCCTTAAAGGCAGTCAAGCTGAGCTAAACTTCCCAAACTCAGTTTCCTCTTTGCCTGCC  267
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  GCCCTCAAAGGCAGTCAAGCTGAGCTCAACTTCCCAAACTCAGTTTCCTCTTTGCCTGCC  240

Query  268  CCAACCTCCATGTCTCCAGGAGACATCCAAGCAGCATGC-GCTTCAGCCGCTGCTGCTTT  326
            ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||
Sbjct  241  CCAACCTCCATGTCTCCAGCAGACATCCAAGCAGCA-GCCGCTTCGGCCGCTGCTGCTTT  299

Query  327  TGGTGCTGCTAGGGATTCGATTGTTATGGCAAATAATAACAGCCAAACAAGCAGTGTGGC  386
            |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||
Sbjct  300  TGGTGCTGCTAGGGATGCGATTGTTATGGCAAATAATAACAGCCAAACAAGTGGTGTGGC  359

Query  387  TCGAATGAATGGTAGTTATGATAATACAAATATGAATGGGTTCATGGACGAGGATTTGGT  446
            | | |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  360  TTGCATGAATAGTAGTTATGATAATACAAATATGAATGGATTCATGGACGAGGATTTGGT  419

Query  447  ATTCGACATGCCTAATGTGCTCATGAATATGGCTGAAGGAATGCTTCTAAGCCCACCTCG  506
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  420  ATTCGACATGCCTAATGTGCTCATGAATATGGCTGAAGGAATGCTTCTTAGCCCCCCTCG  479

Query  507  CCCCCCTGCCTTTGATGCTGCTTACGAAGCTGATGGTTTTACTGGAGCAGACGATTACTT  566
             ||  ||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct  480  TCCTACTGTCTTTGATGCTGCTTACGACGCTGATGGTTTTCCTGGAGGAGACGATTACTT  539

Query  567  GTGGAATTTTCCATGA  582
            ||||||||||||||||
Sbjct  540  GTGGAATTTTCCATGA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28985102819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5