BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934302
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 104 5e-22
> AT2G36695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:15382661-15383440
FORWARD LENGTH=537
Length=537
Score = 104 bits (56), Expect = 5e-22
Identities = 144/185 (78%), Gaps = 12/185 (6%)
Strand=Plus/Plus
Query 20 GATGGTTTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACCA 79
||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 47 GATGGCTTGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACCA 106
Query 80 ATGTCG-TCAAATATATCCTCCTGATCCGAAAGGAATAGAAAGATGTTTTGTTA-GATTT 137
|||| | | | | |||| | |||| || |||||||||||||||||| | |||||
Sbjct 107 ATGT-GATGA--TG-ATCCAC---ATCCCAAGGGAATAGAAAGATGTTTTAC-ACGATTT 158
Query 138 ATGGGAGAGCCAT-TTCCAGAAGAGTTTTTGTGTTGTATCGAAGATCCTTCCATTTGCTT 196
| ||| |||||| ||| | ||| |||||||||| |||||| ||| | ||||||||
Sbjct 159 GTTGGAAAGCCATATTC-ATTGGAGGATTTGTGTTGTGTCGAAGCTCCCTGGATTTGCTT 217
Query 197 CCCTG 201
| |||
Sbjct 218 CGCTG 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14728450457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5